| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is ymfN [C]
Identifier: 120610374
GI number: 120610374
Start: 1848278
End: 1849513
Strand: Direct
Name: ymfN [C]
Synonym: Aave_1691
Alternate gene names: 120610374
Gene position: 1848278-1849513 (Clockwise)
Preceding gene: 120610373
Following gene: 120610375
Centisome position: 34.53
GC content: 67.23
Gene sequence:
>1236_bases ATGAGCACGATCGTGATGGCGGCCTGCTGGCCGCTGCAAATGAGCGGGACCCAGAAGGCCGTGCTGATCTCGCTGGCGGA CCAAGCCAACGACCAGGGCGTGTGCTGGCCCGCGGTGGAGACGATTGCCGAGCGCACCTGCGCATCGGCGCGTGCGGTGC AGGAGGCGTTGAAGTGGCTGGAGGAGCACGGTGCGATCACCCGGGAGCGGCGCAGCCAGCGCAGCACCATGTACACGGTG ACGCCGTCAGCCTTCACAGGTAAGGCATCCAAGCCGAGCCACTACGTCTATCGGATCGAGCACAAGCCATCGGGCCGGTT CTACATCGGCCTGCGCAGCAGCCTATGCCTCCCAGAGGATGACGACTACTGGGGCTCCGGGGCTGCGGCTGTCTGGATCC AGAAGAACAAGGCGGATTGCGTGCGCACGGTGCTGGCTGTGCTGCCCACCCGTCGAGAGGCGGCGGAGTACGAGGTGCTC GAAACGGAAGCAGCGATCCGTGACTCGCTCTGCATGAATCGGCGAGTGGCTGCGGGCGATGGCGGCCGTCGTGCTGCCGA ATTGATGGGTGCAGATGGCGCACCCGCAGATGGCGCACCTGCAGCACATGCACCCGCAGAATCCGCACCCGCGCCAAATG CACCCCTTGGTGCGGATGGCGCGCCTGTGGGTGCAGCAGGCGCACCCACTAACCCGCAGATGGCGCGCTTTGAGGGTGCA GCAGGCGCACCCGAACCATCATTGAACCGTAATAGGAACCACCAGAGAACCACCAATGAACCATCCCCGCCTGCCCGGCA GGCGGGCTCGGCCGGGGCTGGCGGCGAGGAGGAAACGGCGCTGCAGGCGGCATGCCGGACCACGTGGGCGGCATACACCG AGGCCTACGAGCACCGCTACGGCGTGAAGCCGGTGCGCAATGCCCCGGTCAACGCGAACGTCAAGACGCTGGTGAAGAGG CTCGGCCACGACGAAGCGCCGCTGGTGGCCGCGTGGTACGTCGCCAGCGTGAACGAGGCGTTCGTGGTGAAGAACTCGCA CAGCGTGGGGGTGCTGGTGAACCAGGCCGAGGGCTATCGGACGCAGTGGGCTCGAGGCCAAGCGGTGACGGGCACGGCTG CGCAGGCCGCCGACAAGACCAGCGCCAACGCTGACGCCATCGAGGAGGCGAAACGCCTGTCGCGTGAGCGGGCCGCCCGT CGCGCAGCTCAGAGCGGGGAGGGCTGCAATGCTTGA
Upstream 100 bases:
>100_bases ACGCCTTCAACACCACGAAGTTCACCCCGAAGGGCGTGGAGTGGGTCGCGGGGCTTTGGGGCAGGCATCAGGCGCGGAAG GCGCAGGGGGCGGCGTCCCA
Downstream 100 bases:
>100_bases CGAAGACGCACGCGACTGGCTCGCCGAAGAGCTGGGCGCCACCATGGAGCTGGCCGGCCAAGCCATTCGCCCCGCCGCGC TGAGCCTGCTGATGGACGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MSTIVMAACWPLQMSGTQKAVLISLADQANDQGVCWPAVETIAERTCASARAVQEALKWLEEHGAITRERRSQRSTMYTV TPSAFTGKASKPSHYVYRIEHKPSGRFYIGLRSSLCLPEDDDYWGSGAAAVWIQKNKADCVRTVLAVLPTRREAAEYEVL ETEAAIRDSLCMNRRVAAGDGGRRAAELMGADGAPADGAPAAHAPAESAPAPNAPLGADGAPVGAAGAPTNPQMARFEGA AGAPEPSLNRNRNHQRTTNEPSPPARQAGSAGAGGEEETALQAACRTTWAAYTEAYEHRYGVKPVRNAPVNANVKTLVKR LGHDEAPLVAAWYVASVNEAFVVKNSHSVGVLVNQAEGYRTQWARGQAVTGTAAQAADKTSANADAIEEAKRLSRERAAR RAAQSGEGCNA
Sequences:
>Translated_411_residues MSTIVMAACWPLQMSGTQKAVLISLADQANDQGVCWPAVETIAERTCASARAVQEALKWLEEHGAITRERRSQRSTMYTV TPSAFTGKASKPSHYVYRIEHKPSGRFYIGLRSSLCLPEDDDYWGSGAAAVWIQKNKADCVRTVLAVLPTRREAAEYEVL ETEAAIRDSLCMNRRVAAGDGGRRAAELMGADGAPADGAPAAHAPAESAPAPNAPLGADGAPVGAAGAPTNPQMARFEGA AGAPEPSLNRNRNHQRTTNEPSPPARQAGSAGAGGEEETALQAACRTTWAAYTEAYEHRYGVKPVRNAPVNANVKTLVKR LGHDEAPLVAAWYVASVNEAFVVKNSHSVGVLVNQAEGYRTQWARGQAVTGTAAQAADKTSANADAIEEAKRLSRERAAR RAAQSGEGCNA >Mature_410_residues STIVMAACWPLQMSGTQKAVLISLADQANDQGVCWPAVETIAERTCASARAVQEALKWLEEHGAITRERRSQRSTMYTVT PSAFTGKASKPSHYVYRIEHKPSGRFYIGLRSSLCLPEDDDYWGSGAAAVWIQKNKADCVRTVLAVLPTRREAAEYEVLE TEAAIRDSLCMNRRVAAGDGGRRAAELMGADGAPADGAPAAHAPAESAPAPNAPLGADGAPVGAAGAPTNPQMARFEGAA GAPEPSLNRNRNHQRTTNEPSPPARQAGSAGAGGEEETALQAACRTTWAAYTEAYEHRYGVKPVRNAPVNANVKTLVKRL GHDEAPLVAAWYVASVNEAFVVKNSHSVGVLVNQAEGYRTQWARGQAVTGTAAQAADKTSANADAIEEAKRLSRERAARR AAQSGEGCNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43557; Mature: 43426
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTIVMAACWPLQMSGTQKAVLISLADQANDQGVCWPAVETIAERTCASARAVQEALKWL CCCEEEEEECCEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EEHGAITRERRSQRSTMYTVTPSAFTGKASKPSHYVYRIEHKPSGRFYIGLRSSLCLPED HHCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCC DDYWGSGAAAVWIQKNKADCVRTVLAVLPTRREAAEYEVLETEAAIRDSLCMNRRVAAGD CCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCC GGRRAAELMGADGAPADGAPAAHAPAESAPAPNAPLGADGAPVGAAGAPTNPQMARFEGA CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC AGAPEPSLNRNRNHQRTTNEPSPPARQAGSAGAGGEEETALQAACRTTWAAYTEAYEHRY CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC GVKPVRNAPVNANVKTLVKRLGHDEAPLVAAWYVASVNEAFVVKNSHSVGVLVNQAEGYR CCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEHHHHHCCCEEEEECCCCEEEEEECCCCCH TQWARGQAVTGTAAQAADKTSANADAIEEAKRLSRERAARRAAQSGEGCNA HHHCCCCEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure STIVMAACWPLQMSGTQKAVLISLADQANDQGVCWPAVETIAERTCASARAVQEALKWL CCEEEEEECCEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EEHGAITRERRSQRSTMYTVTPSAFTGKASKPSHYVYRIEHKPSGRFYIGLRSSLCLPED HHCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCC DDYWGSGAAAVWIQKNKADCVRTVLAVLPTRREAAEYEVLETEAAIRDSLCMNRRVAAGD CCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCC GGRRAAELMGADGAPADGAPAAHAPAESAPAPNAPLGADGAPVGAAGAPTNPQMARFEGA CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC AGAPEPSLNRNRNHQRTTNEPSPPARQAGSAGAGGEEETALQAACRTTWAAYTEAYEHRY CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC GVKPVRNAPVNANVKTLVKRLGHDEAPLVAAWYVASVNEAFVVKNSHSVGVLVNQAEGYR CCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEHHHHHCCCEEEEECCCCEEEEEECCCCCH TQWARGQAVTGTAAQAADKTSANADAIEEAKRLSRERAARRAAQSGEGCNA HHHCCCCEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA