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The map label for this gene is pchR [H]

Identifier: 120609357

GI number: 120609357

Start: 712447

End: 713430

Strand: Direct

Name: pchR [H]

Synonym: Aave_0658

Alternate gene names: 120609357

Gene position: 712447-713430 (Clockwise)

Preceding gene: 120609353

Following gene: 120609358

Centisome position: 13.31

GC content: 73.88

Gene sequence:

>984_bases
ATGGGCAACGCGCAACCGGCCCCTGACATGACCTGCCGCATCCCGTCCTCGATCTCCGTATCTCCATCCCGCGCGCCGGG
CTGGACCCGCCGTGCGCTGCCGGCCGAATTCGGCGATTGCCATGCCGAATGTTTCACCCTGGGCGACGGCATCACGCTGG
CACGCTCGCACTACCGCCCGCTGCGCGATCTGGTGGAGGAGAGCGTGCAGGCCGATGCCTCGGACGGGGGGCGCACCCTG
GTCATCACGCTGGGGCTGGCGGGAGAGTCGGGCTTCGTTGCCCGCGGGGGAGGGACCACGCTGCGCTTCGGCGCGGGGCG
CACGACCATGGCGGCGTTCCACGGCAGCCGGGGCGAGCGCCGCTACGCGGCCGGCCAGACCGTGCGGCAACTGCGGCTGC
TGCTGTCGGGCGCGGCGCTGGACCGTTACCTGGGCCCGGAGCTGGCGCGGCGGCTCACGCAGACCGATGGCGTGCGCGCC
CTGGATCACCGCGCCAGCCTGCCGGCCAGCGTGGCACTGGCCCGGCGCCTGGCCCAGCCACCCGGGCCGCAGCCCACCGA
TGCGCTGGACCGGCACATCGCCATGCTGAACCTGGCCGCGCTGGAACTGCGCCACCTGGTGCCCACGCCCGTGGCGGACG
CGGCGCCGCCGCGCTGGTCGGAAGACGAGCTGGCGCGCCTGGAGCGCGCCCGCGAGCTGCTGTCCACGCAGATGGACCGC
GCGCTGACCGTGGCCTACCTCAGTGCCGCCGTGGGCCTGGGGGAGCACCGGCTGAAGCAGGGATTCCGCGCCGTGTTCGG
TGCCTCGCCCCAGGCCCTGCTGCTGGAGCTGCGCATGCGCCGCGCCTGGGCGCTGCTGGAGACCGGCTGCCAGGTCGCGC
AGGCCGCCTGGCAGGTGGGCTATGCCCATCCGCCGAATTTCAGCACGGCGTTCACGCGGTTCTTCGGGCGCAGCCCGAAG
TCGGTGTTCGGCCGCCGTTCCTGA

Upstream 100 bases:

>100_bases
TTCTCGTCCTCGTTCGAAAAGCTCTTGCAAGCGCCTTCCGATGCTATGGATGATGAGAATGGATATCATTTGAAAACCTT
TGCGCGTTGGCGCATTCCGT

Downstream 100 bases:

>100_bases
CCGACCCCGTTCCCGCCGCCATCGCCGCGCCCTAGTTCGTTGGAACTAGACCGCGGGCCCGCGGCTAGTTCTTCTGCCTC
GCCCCGGGCGTACCACCGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MGNAQPAPDMTCRIPSSISVSPSRAPGWTRRALPAEFGDCHAECFTLGDGITLARSHYRPLRDLVEESVQADASDGGRTL
VITLGLAGESGFVARGGGTTLRFGAGRTTMAAFHGSRGERRYAAGQTVRQLRLLLSGAALDRYLGPELARRLTQTDGVRA
LDHRASLPASVALARRLAQPPGPQPTDALDRHIAMLNLAALELRHLVPTPVADAAPPRWSEDELARLERARELLSTQMDR
ALTVAYLSAAVGLGEHRLKQGFRAVFGASPQALLLELRMRRAWALLETGCQVAQAAWQVGYAHPPNFSTAFTRFFGRSPK
SVFGRRS

Sequences:

>Translated_327_residues
MGNAQPAPDMTCRIPSSISVSPSRAPGWTRRALPAEFGDCHAECFTLGDGITLARSHYRPLRDLVEESVQADASDGGRTL
VITLGLAGESGFVARGGGTTLRFGAGRTTMAAFHGSRGERRYAAGQTVRQLRLLLSGAALDRYLGPELARRLTQTDGVRA
LDHRASLPASVALARRLAQPPGPQPTDALDRHIAMLNLAALELRHLVPTPVADAAPPRWSEDELARLERARELLSTQMDR
ALTVAYLSAAVGLGEHRLKQGFRAVFGASPQALLLELRMRRAWALLETGCQVAQAAWQVGYAHPPNFSTAFTRFFGRSPK
SVFGRRS
>Mature_326_residues
GNAQPAPDMTCRIPSSISVSPSRAPGWTRRALPAEFGDCHAECFTLGDGITLARSHYRPLRDLVEESVQADASDGGRTLV
ITLGLAGESGFVARGGGTTLRFGAGRTTMAAFHGSRGERRYAAGQTVRQLRLLLSGAALDRYLGPELARRLTQTDGVRAL
DHRASLPASVALARRLAQPPGPQPTDALDRHIAMLNLAALELRHLVPTPVADAAPPRWSEDELARLERARELLSTQMDRA
LTVAYLSAAVGLGEHRLKQGFRAVFGASPQALLLELRMRRAWALLETGCQVAQAAWQVGYAHPPNFSTAFTRFFGRSPKS
VFGRRS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35351; Mature: 35220

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNAQPAPDMTCRIPSSISVSPSRAPGWTRRALPAEFGDCHAECFTLGDGITLARSHYRP
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCHHHHHHHHHH
LRDLVEESVQADASDGGRTLVITLGLAGESGFVARGGGTTLRFGAGRTTMAAFHGSRGER
HHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEECCCCEEEECCCCHHHHHHHCCCCCC
RYAAGQTVRQLRLLLSGAALDRYLGPELARRLTQTDGVRALDHRASLPASVALARRLAQP
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCC
PGPQPTDALDRHIAMLNLAALELRHLVPTPVADAAPPRWSEDELARLERARELLSTQMDR
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ALTVAYLSAAVGLGEHRLKQGFRAVFGASPQALLLELRMRRAWALLETGCQVAQAAWQVG
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YAHPPNFSTAFTRFFGRSPKSVFGRRS
CCCCCCHHHHHHHHHCCCCHHHCCCCC
>Mature Secondary Structure 
GNAQPAPDMTCRIPSSISVSPSRAPGWTRRALPAEFGDCHAECFTLGDGITLARSHYRP
CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCHHHHHHHHHH
LRDLVEESVQADASDGGRTLVITLGLAGESGFVARGGGTTLRFGAGRTTMAAFHGSRGER
HHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEECCCCEEEECCCCHHHHHHHCCCCCC
RYAAGQTVRQLRLLLSGAALDRYLGPELARRLTQTDGVRALDHRASLPASVALARRLAQP
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCC
PGPQPTDALDRHIAMLNLAALELRHLVPTPVADAAPPRWSEDELARLERARELLSTQMDR
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ALTVAYLSAAVGLGEHRLKQGFRAVFGASPQALLLELRMRRAWALLETGCQVAQAAWQVG
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YAHPPNFSTAFTRFFGRSPKSVFGRRS
CCCCCCHHHHHHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]