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The map label for this gene is yijO [H]

Identifier: 120609291

GI number: 120609291

Start: 646650

End: 647615

Strand: Reverse

Name: yijO [H]

Synonym: Aave_0591

Alternate gene names: 120609291

Gene position: 647615-646650 (Counterclockwise)

Preceding gene: 120609292

Following gene: 120609290

Centisome position: 12.1

GC content: 72.67

Gene sequence:

>966_bases
ATGAGCCGGGCGCGCCCGGAACGCGCGTGCCCGGCCGTGCGCACGTATGCGATGGCGGAGCGCTCCCGGCACCTGGACTT
CGACATACGCGACCAGAGCGGCCGCGCGCCGCTCACGCAGCCGCACAAGCACGAGTATTTCCAGATCCAGGTGAGCCTCG
AGGGGGCGACGCAGCACCACGTGGGCGGCACCGTGCGCCCCTTCACCCCGGGGACGCTGAGCTTCGTGCTGCCGCACCGC
ATGCACCTGGTGCCGCATCCGCCCGGCACGCGCTGGCTGGTGGTGAACTTCAGCCAGCGCTTTCTCTGGCCCGACCTGCG
CGTGGACCCGCTGGACCTGGAGGACGTTCCGCTGGCGCTCGCGCCCGAGCTCGCGCCGTTCCAGTTCCAGGAACACCTGG
ACTTCACCTTCGGTGGCGCGGACTGGCAGGCCGTGCTGGCGGTGCTGGACATGCTGCAACAGGAGAACACGTCGCGCCGG
CTGGCATCGGCGGCGCGCATCCGCGGCGGGCTGCTGGAGTTGCTGGCGCGCGCCTGCCGGTACCGGGAGGTGGAGTTGCG
TGCCCTGGCGGCCAACCAGGCACAGCGCGGCAGCCGGCGCGCGGCCCTGGCCCGGGTGCTGCGCTACCTGCGCGGCGAAC
TGGCGGGCGAGCCCACGCTCGCGAGCGCGGCCGAGGCGGCCTGCCTCTCGCCCAACTACCTCGCCCACCTCATCAAGAAG
GAAACGGGCCGGACCTTCACCGAACTGCTGACCGAGCGCCGGCTGGCCCTCGCGCAGGAACTGCTGCTGGCCACCGGGGA
GCGCATCGGCGAGATCGCGCGGCGCTGCGGCTTCGCGGACGAGGCGTACTTCGCGCGGCGCTTCCGCCAGTGGCACGGCC
TGAGCCCGCGCGACTGGCGCACGGAGCGGCTGCGGGAACTGCAGGGCGAGGCCGCTTCCCCTGATCGCGTCCAAGTCTTG
CGCTGA

Upstream 100 bases:

>100_bases
CGGCCGGGAGCGGCGACAAGATCGTCGCGCGCGAGGATCCGGACACCTGGCGCTTCCCGGACCTCGTCGATCTCTGGGCG
CGGCCCGGGGGCACGGCCGG

Downstream 100 bases:

>100_bases
ATCGTCCGCATGCGGCGCCCAGGCCGCTCCTACAGTGGCAGGCACCGGCCCGCGAGAGGCCGCCCGCCATCCAGGACACA
GGAATTCAAAAAGCGGGGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MSRARPERACPAVRTYAMAERSRHLDFDIRDQSGRAPLTQPHKHEYFQIQVSLEGATQHHVGGTVRPFTPGTLSFVLPHR
MHLVPHPPGTRWLVVNFSQRFLWPDLRVDPLDLEDVPLALAPELAPFQFQEHLDFTFGGADWQAVLAVLDMLQQENTSRR
LASAARIRGGLLELLARACRYREVELRALAANQAQRGSRRAALARVLRYLRGELAGEPTLASAAEAACLSPNYLAHLIKK
ETGRTFTELLTERRLALAQELLLATGERIGEIARRCGFADEAYFARRFRQWHGLSPRDWRTERLRELQGEAASPDRVQVL
R

Sequences:

>Translated_321_residues
MSRARPERACPAVRTYAMAERSRHLDFDIRDQSGRAPLTQPHKHEYFQIQVSLEGATQHHVGGTVRPFTPGTLSFVLPHR
MHLVPHPPGTRWLVVNFSQRFLWPDLRVDPLDLEDVPLALAPELAPFQFQEHLDFTFGGADWQAVLAVLDMLQQENTSRR
LASAARIRGGLLELLARACRYREVELRALAANQAQRGSRRAALARVLRYLRGELAGEPTLASAAEAACLSPNYLAHLIKK
ETGRTFTELLTERRLALAQELLLATGERIGEIARRCGFADEAYFARRFRQWHGLSPRDWRTERLRELQGEAASPDRVQVL
R
>Mature_320_residues
SRARPERACPAVRTYAMAERSRHLDFDIRDQSGRAPLTQPHKHEYFQIQVSLEGATQHHVGGTVRPFTPGTLSFVLPHRM
HLVPHPPGTRWLVVNFSQRFLWPDLRVDPLDLEDVPLALAPELAPFQFQEHLDFTFGGADWQAVLAVLDMLQQENTSRRL
ASAARIRGGLLELLARACRYREVELRALAANQAQRGSRRAALARVLRYLRGELAGEPTLASAAEAACLSPNYLAHLIKKE
TGRTFTELLTERRLALAQELLLATGERIGEIARRCGFADEAYFARRFRQWHGLSPRDWRTERLRELQGEAASPDRVQVLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=130, Percent_Identity=36.1538461538462, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790339, Length=272, Percent_Identity=26.8382352941176, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786251, Length=142, Percent_Identity=28.8732394366197, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36446; Mature: 36315

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRARPERACPAVRTYAMAERSRHLDFDIRDQSGRAPLTQPHKHEYFQIQVSLEGATQHH
CCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCHHC
VGGTVRPFTPGTLSFVLPHRMHLVPHPPGTRWLVVNFSQRFLWPDLRVDPLDLEDVPLAL
CCCCCCCCCCCHHHHHCCCCEEECCCCCCCEEEEEECCHHHCCCCCCCCCCCCCCCCHHH
APELAPFQFQEHLDFTFGGADWQAVLAVLDMLQQENTSRRLASAARIRGGLLELLARACR
CCCCCCHHHHHHCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
YREVELRALAANQAQRGSRRAALARVLRYLRGELAGEPTLASAAEAACLSPNYLAHLIKK
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHH
ETGRTFTELLTERRLALAQELLLATGERIGEIARRCGFADEAYFARRFRQWHGLSPRDWR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHH
TERLRELQGEAASPDRVQVLR
HHHHHHHCCCCCCCCCEEECC
>Mature Secondary Structure 
SRARPERACPAVRTYAMAERSRHLDFDIRDQSGRAPLTQPHKHEYFQIQVSLEGATQHH
CCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCHHC
VGGTVRPFTPGTLSFVLPHRMHLVPHPPGTRWLVVNFSQRFLWPDLRVDPLDLEDVPLAL
CCCCCCCCCCCHHHHHCCCCEEECCCCCCCEEEEEECCHHHCCCCCCCCCCCCCCCCHHH
APELAPFQFQEHLDFTFGGADWQAVLAVLDMLQQENTSRRLASAARIRGGLLELLARACR
CCCCCCHHHHHHCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
YREVELRALAANQAQRGSRRAALARVLRYLRGELAGEPTLASAAEAACLSPNYLAHLIKK
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHH
ETGRTFTELLTERRLALAQELLLATGERIGEIARRCGFADEAYFARRFRQWHGLSPRDWR
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHH
TERLRELQGEAASPDRVQVLR
HHHHHHHCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]