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The map label for this gene is hrcV [H]

Identifier: 120609155

GI number: 120609155

Start: 488239

End: 490302

Strand: Reverse

Name: hrcV [H]

Synonym: Aave_0452

Alternate gene names: 120609155

Gene position: 490302-488239 (Counterclockwise)

Preceding gene: 120609156

Following gene: 120609154

Centisome position: 9.16

GC content: 68.27

Gene sequence:

>2064_bases
ATGGCCAAACGATTCGATTCCACCCTGGTCAACGACCTGACGATGGCCGGCTTTCTCGTCGGCGTGATCGCGCTGATGAT
CCTGCCGCTGCCCACCCTGCTGATCGACTCGCTGCTCGCGATCAACCTCAGCATCAGCGTGCTGCTGCTGATGACCACCC
TGTTCATACCGGACGCGGTCTCGCTCTCCACCTTCCCATCGCTGCTGCTGTTCACCACGCTGTTCCGGCTGTCGCTGAAC
ATCGCTTCGACCAAGGCCATCCTGCTGCACGCCGACGCGGGCCACCTGATCGAGAGCTTCGGCCAGCTCGTGGTTGGCGG
CAACCTCGTGGTGGGCATCGTGGTGTTCCTGGTGATCACCATCGTGCAGTTCATCGTCATCGCCAAGGGCTCGGAGCGCG
TCGCCGAAGTCGGCGCGCGCTTCACGCTCGATGCGCTGCCCGGCAAGCAGATGAGCATCGACGCCGACCTGCGCGCCGGC
CTGCTCACCGCCGACGAGGCCAAGGCCAAGCGCGCCCGGCTCAGCATGGAAAGCATGCTGCACGGCGGGATGGACGGCGC
GATGAAGTTCGTCAAGGGCGACGCCATCGCGGGCCTCATCATCACGCTGGTCAACATCCTCGCCGGCATCGTGGTGGGCA
TCCTTTACCACAGCATGACCGCCGGGGAGGCGGCCAACCGCTTCGCCGTGCTGTCCATCGGCGATGCCATGGTCTCGCAG
ATTCCCGCGCTCTTCATCTGTATGGCCGCCGGTATCCTGACCACCCGCGTGGCCGACGAGCACCGCAAGAAGCCCACCTC
CCTGGGCGAGGACATGACGGAGCAGCTCACGCGCAATACCCGCTCCATGTACCTCGCGGGGGCCCTCACCCTGGGCTTCG
CGGCCATTCCGGGCTTCCCCGCCGTTCCGTTCTGCCTGCTGGCGGCGGGCCTCGTGGGCGGCGGCCAGTGGCTGTCGCGC
AGGCGCAAGTCGGCCGCCCCGGGCAGCGCCAAGACCCACTCCAAACCCATCGCCTCCCTGCTGCGCGAAGGCGGCAAGGG
CGAGGGCACGGCCATCCAGCACCGCGCGCCCGAGTTCGCCAAGCCGCTGTCCATCCGCCTGTCCGATCCGCTCGCCCGCC
TGCTCAATGCCGAGCGGCTCGACCAGGCCCTGAACAAGGAACGCGAGGGACTGCAGACGCGGCTGGGGCTGCCCTTCCCC
GGCGCCGCGATGTGGGTCTGGGACGGCCTCGAGGACCTGCGCTTCGACATCCTCATCAACGACGTGCCCGTGGCCCAGCC
CCGGTTGCCCGGCGACATGCTCCTGCTGCTGGACCCGCAGTCCCCCCTGGCCGCGCAGGCCCAGCGGCACGGCCCGCTGC
TGGGCATGGAGGAGTCGCTCTGGGTGCCCCAGACGGCCGTCCCGCCCGCCCAGCGCGCCGGGGCGTGCCTGGAGATCGAG
CAGGTGATCGCCCGCGAGGTGGTGGAGATGCTCCAGCGCCATGCGCACCTCTTCATGGGCGTGCAGGAAGTGCAGTGGAT
CATCGAGCGCGCCACGCCGGAATACCCGGGGCTGGTGGCCGAAGTGCAGAAGGTCATGCCGCTGCAGCGCATGGCCGAGG
TGCTGCGCCGCCTGCTGGAAGAGCAGGTGCCCATCCGCAACATCCGCAGCATCTTCGAGAGCCTCATCACCTGGGCCCCC
AAGGAAAAAGACCTGCTGCTGCTCACCGAATACGTGCGCTCCGACCTGGGCCGCTACCTCGCGCACGAGGCCGGCGGCGG
CCAGCGGCACATCTCGGCCATCCTGCTCGCCCCGGAAATCGAGCAGGCGATCCGCGGCTGCATCAAGCCCACGCCCGCGG
GCAACTACCTCGCCATGTCGCCGGACGATGCGCGCGACATCACCGACCGCATCGCGGCCGTCGCCCGCTCGTCGCCCGCC
ACCGGCGTGGCCCTGGTCACTTCCATGGACATCCGGCGCTATGTCAAGAAAATGATCGAAGGACGCATCGACTGGCTGCG
CGTGTACTCCTTCCAGGAGCTGGGCAGCCTGATCGAGCTGCGGCCGATCGGCCGCGTTGCATAG

Upstream 100 bases:

>100_bases
TCGTGCTGCGCTGGGTGGCCGAACTCGACCGGCTCGGCGGCGGCAGCCCGCGCTGACGCCCTGCTTTCCATTCCGTGCCC
CGCTCCCCGAGGATCATTCC

Downstream 100 bases:

>100_bases
CAGGCACGCCGTGCAACGCGACCTCCCGCCATTGCGCCAGGGCCTGGCCAGCGGCCGCGGCACGCCCGCGGGCGCCCTGC
CGCCCGCGCCCGGCGCCGCG

Product: HrcV family type III secretion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 687; Mature: 686

Protein sequence:

>687_residues
MAKRFDSTLVNDLTMAGFLVGVIALMILPLPTLLIDSLLAINLSISVLLLMTTLFIPDAVSLSTFPSLLLFTTLFRLSLN
IASTKAILLHADAGHLIESFGQLVVGGNLVVGIVVFLVITIVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAG
LLTADEAKAKRARLSMESMLHGGMDGAMKFVKGDAIAGLIITLVNILAGIVVGILYHSMTAGEAANRFAVLSIGDAMVSQ
IPALFICMAAGILTTRVADEHRKKPTSLGEDMTEQLTRNTRSMYLAGALTLGFAAIPGFPAVPFCLLAAGLVGGGQWLSR
RRKSAAPGSAKTHSKPIASLLREGGKGEGTAIQHRAPEFAKPLSIRLSDPLARLLNAERLDQALNKEREGLQTRLGLPFP
GAAMWVWDGLEDLRFDILINDVPVAQPRLPGDMLLLLDPQSPLAAQAQRHGPLLGMEESLWVPQTAVPPAQRAGACLEIE
QVIAREVVEMLQRHAHLFMGVQEVQWIIERATPEYPGLVAEVQKVMPLQRMAEVLRRLLEEQVPIRNIRSIFESLITWAP
KEKDLLLLTEYVRSDLGRYLAHEAGGGQRHISAILLAPEIEQAIRGCIKPTPAGNYLAMSPDDARDITDRIAAVARSSPA
TGVALVTSMDIRRYVKKMIEGRIDWLRVYSFQELGSLIELRPIGRVA

Sequences:

>Translated_687_residues
MAKRFDSTLVNDLTMAGFLVGVIALMILPLPTLLIDSLLAINLSISVLLLMTTLFIPDAVSLSTFPSLLLFTTLFRLSLN
IASTKAILLHADAGHLIESFGQLVVGGNLVVGIVVFLVITIVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAG
LLTADEAKAKRARLSMESMLHGGMDGAMKFVKGDAIAGLIITLVNILAGIVVGILYHSMTAGEAANRFAVLSIGDAMVSQ
IPALFICMAAGILTTRVADEHRKKPTSLGEDMTEQLTRNTRSMYLAGALTLGFAAIPGFPAVPFCLLAAGLVGGGQWLSR
RRKSAAPGSAKTHSKPIASLLREGGKGEGTAIQHRAPEFAKPLSIRLSDPLARLLNAERLDQALNKEREGLQTRLGLPFP
GAAMWVWDGLEDLRFDILINDVPVAQPRLPGDMLLLLDPQSPLAAQAQRHGPLLGMEESLWVPQTAVPPAQRAGACLEIE
QVIAREVVEMLQRHAHLFMGVQEVQWIIERATPEYPGLVAEVQKVMPLQRMAEVLRRLLEEQVPIRNIRSIFESLITWAP
KEKDLLLLTEYVRSDLGRYLAHEAGGGQRHISAILLAPEIEQAIRGCIKPTPAGNYLAMSPDDARDITDRIAAVARSSPA
TGVALVTSMDIRRYVKKMIEGRIDWLRVYSFQELGSLIELRPIGRVA
>Mature_686_residues
AKRFDSTLVNDLTMAGFLVGVIALMILPLPTLLIDSLLAINLSISVLLLMTTLFIPDAVSLSTFPSLLLFTTLFRLSLNI
ASTKAILLHADAGHLIESFGQLVVGGNLVVGIVVFLVITIVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAGL
LTADEAKAKRARLSMESMLHGGMDGAMKFVKGDAIAGLIITLVNILAGIVVGILYHSMTAGEAANRFAVLSIGDAMVSQI
PALFICMAAGILTTRVADEHRKKPTSLGEDMTEQLTRNTRSMYLAGALTLGFAAIPGFPAVPFCLLAAGLVGGGQWLSRR
RKSAAPGSAKTHSKPIASLLREGGKGEGTAIQHRAPEFAKPLSIRLSDPLARLLNAERLDQALNKEREGLQTRLGLPFPG
AAMWVWDGLEDLRFDILINDVPVAQPRLPGDMLLLLDPQSPLAAQAQRHGPLLGMEESLWVPQTAVPPAQRAGACLEIEQ
VIAREVVEMLQRHAHLFMGVQEVQWIIERATPEYPGLVAEVQKVMPLQRMAEVLRRLLEEQVPIRNIRSIFESLITWAPK
EKDLLLLTEYVRSDLGRYLAHEAGGGQRHISAILLAPEIEQAIRGCIKPTPAGNYLAMSPDDARDITDRIAAVARSSPAT
GVALVTSMDIRRYVKKMIEGRIDWLRVYSFQELGSLIELRPIGRVA

Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG4789

COG function: function code U; Type III secretory pathway, component EscV

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]

Homologues:

Organism=Escherichia coli, GI1788187, Length=623, Percent_Identity=35.1524879614767, Blast_Score=326, Evalue=4e-90,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001712
- InterPro:   IPR006302 [H]

Pfam domain/function: PF00771 FHIPEP [H]

EC number: NA

Molecular weight: Translated: 74519; Mature: 74388

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS00994 FHIPEP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRFDSTLVNDLTMAGFLVGVIALMILPLPTLLIDSLLAINLSISVLLLMTTLFIPDAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLSTFPSLLLFTTLFRLSLNIASTKAILLHADAGHLIESFGQLVVGGNLVVGIVVFLVIT
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAGLLTADEAKAKRARLSMESML
HHHHHHHCCCCHHHHHHCCCEEEECCCCCCEEECHHHHHCCCCCHHHHHHHHHHHHHHHH
HGGMDGAMKFVKGDAIAGLIITLVNILAGIVVGILYHSMTAGEAANRFAVLSIGDAMVSQ
HCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEEECHHHHHH
IPALFICMAAGILTTRVADEHRKKPTSLGEDMTEQLTRNTRSMYLAGALTLGFAAIPGFP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AVPFCLLAAGLVGGGQWLSRRRKSAAPGSAKTHSKPIASLLREGGKGEGTAIQHRAPEFA
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCHHC
KPLSIRLSDPLARLLNAERLDQALNKEREGLQTRLGLPFPGAAMWVWDGLEDLRFDILIN
CCCEEEECCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHEEEEEEC
DVPVAQPRLPGDMLLLLDPQSPLAAQAQRHGPLLGMEESLWVPQTAVPPAQRAGACLEIE
CCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHH
QVIAREVVEMLQRHAHLFMGVQEVQWIIERATPEYPGLVAEVQKVMPLQRMAEVLRRLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
EQVPIRNIRSIFESLITWAPKEKDLLLLTEYVRSDLGRYLAHEAGGGQRHISAILLAPEI
HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEECHHH
EQAIRGCIKPTPAGNYLAMSPDDARDITDRIAAVARSSPATGVALVTSMDIRRYVKKMIE
HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
GRIDWLRVYSFQELGSLIELRPIGRVA
CCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AKRFDSTLVNDLTMAGFLVGVIALMILPLPTLLIDSLLAINLSISVLLLMTTLFIPDAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLSTFPSLLLFTTLFRLSLNIASTKAILLHADAGHLIESFGQLVVGGNLVVGIVVFLVIT
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAGLLTADEAKAKRARLSMESML
HHHHHHHCCCCHHHHHHCCCEEEECCCCCCEEECHHHHHCCCCCHHHHHHHHHHHHHHHH
HGGMDGAMKFVKGDAIAGLIITLVNILAGIVVGILYHSMTAGEAANRFAVLSIGDAMVSQ
HCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEEECHHHHHH
IPALFICMAAGILTTRVADEHRKKPTSLGEDMTEQLTRNTRSMYLAGALTLGFAAIPGFP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AVPFCLLAAGLVGGGQWLSRRRKSAAPGSAKTHSKPIASLLREGGKGEGTAIQHRAPEFA
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCHHC
KPLSIRLSDPLARLLNAERLDQALNKEREGLQTRLGLPFPGAAMWVWDGLEDLRFDILIN
CCCEEEECCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHEEEEEEC
DVPVAQPRLPGDMLLLLDPQSPLAAQAQRHGPLLGMEESLWVPQTAVPPAQRAGACLEIE
CCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHH
QVIAREVVEMLQRHAHLFMGVQEVQWIIERATPEYPGLVAEVQKVMPLQRMAEVLRRLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
EQVPIRNIRSIFESLITWAPKEKDLLLLTEYVRSDLGRYLAHEAGGGQRHISAILLAPEI
HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEECHHH
EQAIRGCIKPTPAGNYLAMSPDDARDITDRIAAVARSSPATGVALVTSMDIRRYVKKMIE
HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
GRIDWLRVYSFQELGSLIELRPIGRVA
CCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8316211; 11823852 [H]