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The map label for this gene is hrcU [H]

Identifier: 120609156

GI number: 120609156

Start: 490347

End: 491405

Strand: Reverse

Name: hrcU [H]

Synonym: Aave_0453

Alternate gene names: 120609156

Gene position: 491405-490347 (Counterclockwise)

Preceding gene: 120609161

Following gene: 120609155

Centisome position: 9.18

GC content: 67.23

Gene sequence:

>1059_bases
ATGTCGGAAAAAACCGAAGAGCCCACAGCCAAGAAACTCAAGGACGCCCGCAAGAAGGGCCAGACCACCAAGAGCCAGGA
CCTGGTGGCCGGTGCCGTCCTGGGCGCGGCCCTGCTCGTGCTCACGGGCGCGGGGCCCATGCTCTACGACCGCGTGCGCC
GCATCGTCACCACGGCGCTGGAACAGGGCGTGCGCGTGCACAGCACGCAGGAGCTGCTGGCGCTGCTGTCCTCCATGGCG
CTCGACGGCATGGCGGTTGCCTTCGGCATGGTCATCGTCTCGGTGCTGGTGGCCGTGCTGGCCCTGCTGCCGCAGGTCGG
CTTCATGATCACCTTCGAGCCCCTCACGCCCAAGTTCGACAGCCTGAACCCGGCCGAAGGACTCAAGAAGATGTTCAACG
CGCGGTCGCTCGTCGAATTCGCCAAGTCCGTCCTCAAGGCCGTCGTCTTCGGCGCCGTGCTGTGGCACATCGTGACCGGG
CTGGTACCCCTGCTCGTGGGCTCCGTCTATCTCACGCCCGAGGCCAGCGGACAGATCGCCTGGAGCGCGCTGCTGAAACT
CTTTTCGTTCGCATTCCTCGTCTTCCTGGTCATCGGCCCCCTCGACTTCGGCCTGCAGCACTGGCTCTTCATGCGGGACC
AGCGCATGAGCAAGGACGACGTGAAGCGCGAGAACAAGGACAGCGAAGGCGATCCGCACCTCAAGGGCCATCTCAAGTCG
CTGCGCGAGGAAATGGCGACATCGCCGCCGCAGGAACGGGTGCCGGGCGCCACGGTGGTCGTCACCAACCCCACCCATTA
CGCCGTGGCGCTGCGCTACGAAGCCGGCGCGACCCCGTTGCCCATCGTCGTGGCCAAGGGCATGGACGAACAGGCGGCCG
TCATCCGCGGCCTGGCCGCGCTGCACCACATCCCGCTCATCGCCAATCCGCCGCTGGCGCGCGCCCTGCACAAGCTGCCG
CTGGACCAGCCCATTCCCGAGGAACTGTTCGAAGCCGTCTCCGTCGTGCTGCGCTGGGTGGCCGAACTCGACCGGCTCGG
CGGCGGCAGCCCGCGCTGA

Upstream 100 bases:

>100_bases
CGCGCCGGGCAGCACCGCTTCGCCCGGCACGGGGCCCCGCGGCCGCCCGGGTCCTAGATTGGCGCATGCCGCGCATTCCG
CGCCGGATCGATGGCCCACC

Downstream 100 bases:

>100_bases
CGCCCTGCTTTCCATTCCGTGCCCCGCTCCCCGAGGATCATTCCATGGCCAAACGATTCGATTCCACCCTGGTCAACGAC
CTGACGATGGCCGGCTTTCT

Product: type III secretion system protein HrcU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSEKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPMLYDRVRRIVTTALEQGVRVHSTQELLALLSSMA
LDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFDSLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTG
LVPLLVGSVYLTPEASGQIAWSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS
LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAALHHIPLIANPPLARALHKLP
LDQPIPEELFEAVSVVLRWVAELDRLGGGSPR

Sequences:

>Translated_352_residues
MSEKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPMLYDRVRRIVTTALEQGVRVHSTQELLALLSSMA
LDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFDSLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTG
LVPLLVGSVYLTPEASGQIAWSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS
LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAALHHIPLIANPPLARALHKLP
LDQPIPEELFEAVSVVLRWVAELDRLGGGSPR
>Mature_351_residues
SEKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPMLYDRVRRIVTTALEQGVRVHSTQELLALLSSMAL
DGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFDSLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGL
VPLLVGSVYLTPEASGQIAWSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKSL
REEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAALHHIPLIANPPLARALHKLPL
DQPIPEELFEAVSVVLRWVAELDRLGGGSPR

Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=358, Percent_Identity=32.9608938547486, Blast_Score=163, Evalue=2e-41,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 38134; Mature: 38003

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPMLYDRVRRIVTTAL
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
EQGVRVHSTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGQIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH
WSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHH
LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA
HHHHHHCCCCHHHCCCCEEEEECCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHH
LHHIPLIANPPLARALHKLPLDQPIPEELFEAVSVVLRWVAELDRLGGGSPR
HHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SEKTEEPTAKKLKDARKKGQTTKSQDLVAGAVLGAALLVLTGAGPMLYDRVRRIVTTAL
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
EQGVRVHSTQELLALLSSMALDGMAVAFGMVIVSVLVAVLALLPQVGFMITFEPLTPKFD
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
SLNPAEGLKKMFNARSLVEFAKSVLKAVVFGAVLWHIVTGLVPLLVGSVYLTPEASGQIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH
WSALLKLFSFAFLVFLVIGPLDFGLQHWLFMRDQRMSKDDVKRENKDSEGDPHLKGHLKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHH
LREEMATSPPQERVPGATVVVTNPTHYAVALRYEAGATPLPIVVAKGMDEQAAVIRGLAA
HHHHHHCCCCHHHCCCCEEEEECCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHH
LHHIPLIANPPLARALHKLPLDQPIPEELFEAVSVVLRWVAELDRLGGGSPR
HHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8316211; 11823852 [H]