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The map label for this gene is ybdK [C]

Identifier: 120609137

GI number: 120609137

Start: 470913

End: 472037

Strand: Reverse

Name: ybdK [C]

Synonym: Aave_0434

Alternate gene names: 120609137

Gene position: 472037-470913 (Counterclockwise)

Preceding gene: 120609138

Following gene: 120609135

Centisome position: 8.82

GC content: 67.38

Gene sequence:

>1125_bases
ATGAGCCTCGAAGCCTTCCACCATTCCGAGCCGCTGACGCTCGGCGTCGAGCTCGAGCTGCAGCTCGTCAACACGCACAA
CTACGATCTCGCGCCCTACGCCGAGGACATGCTGCGCCTCATGGCCAGGCAGCCCCTGCCCGGCAGCGTGGTGCCGGAGA
TGACCAACAGCATGATCGAGGTCTCGACGGGCATCTGCCATTCGGGCAGCGAAGTGCTGGGCCAGCTCACGCAGATCCGC
GACGCGCTGGTCAGGAGCGCCGACAAGCTCAACATCGCCGTCGTGGGCGGCGGCACCCACCCGTTCCAGCAATGGCACGA
GCGCCGCATCTACGACAAGCCCCGCTTCCAGGAACTGTCGCAGCTCTACGGCTACCTCTCCAAGCAGTTCACCATCTTCG
GCCAGCACGTCCATATCGGCTGCCCGGACGCGGATGCCGCGCTGCTCATGCTGCACCGCATGTCGCGCTACATCCCGCAC
TTCATCGCGCTGTCGGCCTCCAGCCCCTACGTGCAGGGCCAGGACACGGCCTTCGATTCGGCGCGGCTGAACTCCGTGTT
CGCCTTTCCGCTGTCGGGCCGTGCCCCCATGGTGCTGACCTGGAAGGACTTCGAGGCCTACTTCGACAAGATGACGCGCA
CCGGCGTCGTCAAGAGCATGAAGGACTTCTACTGGGACATCCGGCCCAAGCCCGAGTTCGGCACGATCGAGATCCGCGTG
TTCGACACGCCGCTCACCATCGAGCGCGCCGCCGCGCTGTCGGCCTTCGTGCAGTCGCTGGGAGCGTGGTTCCTGGCCGA
GCAACCCTTCACGCCCAGCGAGGACGACTACCTCGTCTATACCTACAACCGCTTCCAGGCCTGCCGCTTCGGCATGCAGG
CGGTGTACGTCGATCCGGCCACCGGCGAGCACATGCCGCTGCGCGACCACATCCTGCAGACCATCGACCACATCGCGCGC
CACGCCACGGTCACCGGGGCCTCCGGCGCGCTGCACCTGCTGCGCAGCGAAGCCGCGGCCGGCCAGAACGACGCACGCTG
GCTGCGCGACCGCCAGCGCGACGAACAGTTGCTGGGCGAAGTGAGCCGCCAGGCCGCGCTGCGGTTCCGGGGCGCGCCGG
CGTAG

Upstream 100 bases:

>100_bases
GCGCCGTGATCGCCACGGTGGCCATCTACCGCGCCGGAGAGAGTTCGAAACCCTGGGCGCCCCAGACACGCGCCGCCAAC
GCAGAGCGGGAGCAGCAGCC

Downstream 100 bases:

>100_bases
TACCCGCCGGCGGCCCGCCGGGCGGCGGGAGCTCAACCCGCCGAGGCGGCGGGCATCCCGGCGGCTTTCTCGCGCACGCG
CGCCGCCTGCATTTCGGTGG

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MSLEAFHHSEPLTLGVELELQLVNTHNYDLAPYAEDMLRLMARQPLPGSVVPEMTNSMIEVSTGICHSGSEVLGQLTQIR
DALVRSADKLNIAVVGGGTHPFQQWHERRIYDKPRFQELSQLYGYLSKQFTIFGQHVHIGCPDADAALLMLHRMSRYIPH
FIALSASSPYVQGQDTAFDSARLNSVFAFPLSGRAPMVLTWKDFEAYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRV
FDTPLTIERAAALSAFVQSLGAWFLAEQPFTPSEDDYLVYTYNRFQACRFGMQAVYVDPATGEHMPLRDHILQTIDHIAR
HATVTGASGALHLLRSEAAAGQNDARWLRDRQRDEQLLGEVSRQAALRFRGAPA

Sequences:

>Translated_374_residues
MSLEAFHHSEPLTLGVELELQLVNTHNYDLAPYAEDMLRLMARQPLPGSVVPEMTNSMIEVSTGICHSGSEVLGQLTQIR
DALVRSADKLNIAVVGGGTHPFQQWHERRIYDKPRFQELSQLYGYLSKQFTIFGQHVHIGCPDADAALLMLHRMSRYIPH
FIALSASSPYVQGQDTAFDSARLNSVFAFPLSGRAPMVLTWKDFEAYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRV
FDTPLTIERAAALSAFVQSLGAWFLAEQPFTPSEDDYLVYTYNRFQACRFGMQAVYVDPATGEHMPLRDHILQTIDHIAR
HATVTGASGALHLLRSEAAAGQNDARWLRDRQRDEQLLGEVSRQAALRFRGAPA
>Mature_373_residues
SLEAFHHSEPLTLGVELELQLVNTHNYDLAPYAEDMLRLMARQPLPGSVVPEMTNSMIEVSTGICHSGSEVLGQLTQIRD
ALVRSADKLNIAVVGGGTHPFQQWHERRIYDKPRFQELSQLYGYLSKQFTIFGQHVHIGCPDADAALLMLHRMSRYIPHF
IALSASSPYVQGQDTAFDSARLNSVFAFPLSGRAPMVLTWKDFEAYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRVF
DTPLTIERAAALSAFVQSLGAWFLAEQPFTPSEDDYLVYTYNRFQACRFGMQAVYVDPATGEHMPLRDHILQTIDHIARH
ATVTGASGALHLLRSEAAAGQNDARWLRDRQRDEQLLGEVSRQAALRFRGAPA

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=368, Percent_Identity=42.6630434782609, Blast_Score=338, Evalue=3e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_ACIAC (A1TJA3)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_968815.1
- ProteinModelPortal:   A1TJA3
- SMR:   A1TJA3
- STRING:   A1TJA3
- GeneID:   4669190
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_0434
- NMPDR:   fig|397945.5.peg.387
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   DKPRFQE
- PhylomeDB:   A1TJA3
- ProtClustDB:   PRK13516
- BioCyc:   AAVE397945:AAVE_0434-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42160; Mature: 42029

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEAFHHSEPLTLGVELELQLVNTHNYDLAPYAEDMLRLMARQPLPGSVVPEMTNSMIE
CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
VSTGICHSGSEVLGQLTQIRDALVRSADKLNIAVVGGGTHPFQQWHERRIYDKPRFQELS
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCHHHHHHH
QLYGYLSKQFTIFGQHVHIGCPDADAALLMLHRMSRYIPHFIALSASSPYVQGQDTAFDS
HHHHHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCH
ARLNSVFAFPLSGRAPMVLTWKDFEAYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRV
HHCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
FDTPLTIERAAALSAFVQSLGAWFLAEQPFTPSEDDYLVYTYNRFQACRFGMQAVYVDPA
ECCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECHHHHHHHCCEEEEECCC
TGEHMPLRDHILQTIDHIARHATVTGASGALHLLRSEAAAGQNDARWLRDRQRDEQLLGE
CCCCCCHHHHHHHHHHHHHHHCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VSRQAALRFRGAPA
HHHHHHHHCCCCCC
>Mature Secondary Structure 
SLEAFHHSEPLTLGVELELQLVNTHNYDLAPYAEDMLRLMARQPLPGSVVPEMTNSMIE
CCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
VSTGICHSGSEVLGQLTQIRDALVRSADKLNIAVVGGGTHPFQQWHERRIYDKPRFQELS
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCHHHHHHH
QLYGYLSKQFTIFGQHVHIGCPDADAALLMLHRMSRYIPHFIALSASSPYVQGQDTAFDS
HHHHHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCH
ARLNSVFAFPLSGRAPMVLTWKDFEAYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRV
HHCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
FDTPLTIERAAALSAFVQSLGAWFLAEQPFTPSEDDYLVYTYNRFQACRFGMQAVYVDPA
ECCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECHHHHHHHCCEEEEECCC
TGEHMPLRDHILQTIDHIARHATVTGASGALHLLRSEAAAGQNDARWLRDRQRDEQLLGE
CCCCCCHHHHHHHHHHHHHHHCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VSRQAALRFRGAPA
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA