| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120609134
Identifier: 120609134
GI number: 120609134
Start: 465514
End: 467274
Strand: Reverse
Name: 120609134
Synonym: Aave_0431
Alternate gene names: NA
Gene position: 467274-465514 (Counterclockwise)
Preceding gene: 120609135
Following gene: 120609133
Centisome position: 8.73
GC content: 76.77
Gene sequence:
>1761_bases ATGTCCTCTGCATGCCCGGGCACGGCCCATTCCACGCTTTCCACGCTTTCCGCGCCACCCGTCCCGCCCCCGCGGCGCGC GCGCCGCGCGGCTGCCGCCTGCCTGTGGCTTGCGGCGGCCGGCATGGCCAGCGCGCAGGAGCGCCCCTCCGTGGTGGCCT CGCGCATCACGCAGGTGACGGTGGCGCCGGGCGTCGCCACGATCGAGCGCAGCGCGCGCATCGCCGCGGGCGCGCGCAGC GCCACCTTCGCCTGCCTGCCCGCCAGCCTGGATCCGGACAGCCTGCAGATCAGCGCGGATGCCGGCGTGCGCGTGGGCGA ATTCAAGGTCACCACCGAAGACCGCGACGTGGCGGCCGACTGCGCGAGCCCGCTGGACGACCGCGTCCGGGCGCTCGAAG ACCAGATCGCGGGTGTGCAGGCCGAGATCGCGGCGCTGCGGCGCGCGGACCGGTACCTCGACCACCTGGCCGGCGGCACC AGCGCCGACGGCGCCCCGCGGGACGGCCAGGGCGGCCCGCCGGCGGCCGCGGCCACCGTGGCGCCGGCCGTTCTCCCCGC CCAGATACCGGCCACCGCCGAAGCGCTGCGCAAGACATCGGCCGACACCCTCGTGCGCCTGCAGCCGCTGCTGCGCAGGC AGGAAGCGCTGGAGCGCGACCTGAAGCCGCTGCGTGCCGAACGCGACCGCACGGCGGGCGGGCCACGCGCCAAGGTGGTC TCCGTGGCCGTGAACCTCGCCACCGACCGGGATGCCGGCCTGCGCCTGTCCTACCAGGTGCGCGGCCCGGGCTGGCAGCC GGCCTACCGCGCGCGGCTGGACACCGCCACGGGCGCGGTGGTGCTCGAGCGGCTGGCCGTCGTGGCCCAGCGCAGTGGCG AAGACTGGAACGACGTGCGGCTCGTGCTCACCACCCAGGCCCCCGCGCGGGCCACGGCAGGGCCGCGGCCCGGCACCTGG ACGGTGGACGTGGCGCCGCCGCCGGAGCCGCAGTACCGCCTCGCCCGGCTGCCGGCCGCGATGGCGATGGCGGCGCCCGC GCCGGCCCCCATGGCGGAATCCGCCGACGCCGGGGAAGAGCCCCTGCCCCGCTTCGACGTCGTCGCCCTGGCCGGCAGCT ACGCGACGCGCTTCGAGGTGCCGCGGCGCCTGAGCGTGCCCGCGAGCGGGCAGCGCACCACGCTGCTGCTGGGCACGCAC GACGCCGGGGCCCGCCTCGTCACGCGCACCGTGCCCGCGCAGCGCGAAACCGCCTACCTGGTGGCGGAGATCGCGCCGCC CGCCGGCGTGTGGCCGGCCGGGGCCGTCGGCCTGTACCGCGATGGCGCCTTCGTGGGCCAGGGCCGGCTGGACTTCGCCT CGGCCACGGATGCGGGGGCCCCCGGCGGGCGCACGGTGCCGCTGTGGTTCGGCCCGGACGATCTCGTGCAAGTGCACGCC GAGCCGCTCCGTGAAACCACGGGCACCGCCGGCTTCACGGGCGCCGCCGTGGAGCGCCGCACCCAGCTCGCCTACCGCGT CGAGAACCGCCATACCACCCCGATCACGCTCCAGGTGATCGACACAGCCCCCGTGTCGCGCGACGCGAAGATCGAGGTCG AATCCCGCTACGCGCCGTCCCCGCTCACCACCGCCTGGGAGGGCACGGCCGGCATCGTCGCCTGGCAGCAGCCCCTGGCG CCGGGCGCCGGGGCGCGCTTCACGGCGGAGCACGTGGTGCGCCACGGCAAGGACGTGGAACTGAACGAGAACCGCCGATG A
Upstream 100 bases:
>100_bases CGCGCAATACCTGGCCTTCGACCACTTCCGCTGAACGCGCGCGGCAGAGGCGCTGCTAGCATTGCCCTCCCCCAGTCCTA CCCAGAGAGAAGGAGCGCGG
Downstream 100 bases:
>100_bases ACGCCTTGCCTCCCCAGCCCGCGGCCGGAGCGGCCGCGGCCCCCCGCAGGGCCAGCGCCGCCTTCATGCGGTCCCACCCG GCGCACTGGATCGCCCTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 586; Mature: 585
Protein sequence:
>586_residues MSSACPGTAHSTLSTLSAPPVPPPRRARRAAAACLWLAAAGMASAQERPSVVASRITQVTVAPGVATIERSARIAAGARS ATFACLPASLDPDSLQISADAGVRVGEFKVTTEDRDVAADCASPLDDRVRALEDQIAGVQAEIAALRRADRYLDHLAGGT SADGAPRDGQGGPPAAAATVAPAVLPAQIPATAEALRKTSADTLVRLQPLLRRQEALERDLKPLRAERDRTAGGPRAKVV SVAVNLATDRDAGLRLSYQVRGPGWQPAYRARLDTATGAVVLERLAVVAQRSGEDWNDVRLVLTTQAPARATAGPRPGTW TVDVAPPPEPQYRLARLPAAMAMAAPAPAPMAESADAGEEPLPRFDVVALAGSYATRFEVPRRLSVPASGQRTTLLLGTH DAGARLVTRTVPAQRETAYLVAEIAPPAGVWPAGAVGLYRDGAFVGQGRLDFASATDAGAPGGRTVPLWFGPDDLVQVHA EPLRETTGTAGFTGAAVERRTQLAYRVENRHTTPITLQVIDTAPVSRDAKIEVESRYAPSPLTTAWEGTAGIVAWQQPLA PGAGARFTAEHVVRHGKDVELNENRR
Sequences:
>Translated_586_residues MSSACPGTAHSTLSTLSAPPVPPPRRARRAAAACLWLAAAGMASAQERPSVVASRITQVTVAPGVATIERSARIAAGARS ATFACLPASLDPDSLQISADAGVRVGEFKVTTEDRDVAADCASPLDDRVRALEDQIAGVQAEIAALRRADRYLDHLAGGT SADGAPRDGQGGPPAAAATVAPAVLPAQIPATAEALRKTSADTLVRLQPLLRRQEALERDLKPLRAERDRTAGGPRAKVV SVAVNLATDRDAGLRLSYQVRGPGWQPAYRARLDTATGAVVLERLAVVAQRSGEDWNDVRLVLTTQAPARATAGPRPGTW TVDVAPPPEPQYRLARLPAAMAMAAPAPAPMAESADAGEEPLPRFDVVALAGSYATRFEVPRRLSVPASGQRTTLLLGTH DAGARLVTRTVPAQRETAYLVAEIAPPAGVWPAGAVGLYRDGAFVGQGRLDFASATDAGAPGGRTVPLWFGPDDLVQVHA EPLRETTGTAGFTGAAVERRTQLAYRVENRHTTPITLQVIDTAPVSRDAKIEVESRYAPSPLTTAWEGTAGIVAWQQPLA PGAGARFTAEHVVRHGKDVELNENRR >Mature_585_residues SSACPGTAHSTLSTLSAPPVPPPRRARRAAAACLWLAAAGMASAQERPSVVASRITQVTVAPGVATIERSARIAAGARSA TFACLPASLDPDSLQISADAGVRVGEFKVTTEDRDVAADCASPLDDRVRALEDQIAGVQAEIAALRRADRYLDHLAGGTS ADGAPRDGQGGPPAAAATVAPAVLPAQIPATAEALRKTSADTLVRLQPLLRRQEALERDLKPLRAERDRTAGGPRAKVVS VAVNLATDRDAGLRLSYQVRGPGWQPAYRARLDTATGAVVLERLAVVAQRSGEDWNDVRLVLTTQAPARATAGPRPGTWT VDVAPPPEPQYRLARLPAAMAMAAPAPAPMAESADAGEEPLPRFDVVALAGSYATRFEVPRRLSVPASGQRTTLLLGTHD AGARLVTRTVPAQRETAYLVAEIAPPAGVWPAGAVGLYRDGAFVGQGRLDFASATDAGAPGGRTVPLWFGPDDLVQVHAE PLRETTGTAGFTGAAVERRTQLAYRVENRHTTPITLQVIDTAPVSRDAKIEVESRYAPSPLTTAWEGTAGIVAWQQPLAP GAGARFTAEHVVRHGKDVELNENRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI17566996, Length=401, Percent_Identity=24.1895261845387, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71988071, Length=409, Percent_Identity=24.6943765281174, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17566994, Length=376, Percent_Identity=23.1382978723404, Blast_Score=79, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17566992, Length=376, Percent_Identity=23.1382978723404, Blast_Score=79, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61501; Mature: 61370
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSACPGTAHSTLSTLSAPPVPPPRRARRAAAACLWLAAAGMASAQERPSVVASRITQVT CCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEE VAPGVATIERSARIAAGARSATFACLPASLDPDSLQISADAGVRVGEFKVTTEDRDVAAD ECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCEEEEEEEEECCCCHHHHH CASPLDDRVRALEDQIAGVQAEIAALRRADRYLDHLAGGTSADGAPRDGQGGPPAAAATV HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH APAVLPAQIPATAEALRKTSADTLVRLQPLLRRQEALERDLKPLRAERDRTAGGPRAKVV HHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE SVAVNLATDRDAGLRLSYQVRGPGWQPAYRARLDTATGAVVLERLAVVAQRSGEDWNDVR EEEEEEECCCCCCEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEE LVLTTQAPARATAGPRPGTWTVDVAPPPEPQYRLARLPAAMAMAAPAPAPMAESADAGEE EEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCC PLPRFDVVALAGSYATRFEVPRRLSVPASGQRTTLLLGTHDAGARLVTRTVPAQRETAYL CCCCEEEEEECCCCHHHHCCCCEECCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEE VAEIAPPAGVWPAGAVGLYRDGAFVGQGRLDFASATDAGAPGGRTVPLWFGPDDLVQVHA EEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH EPLRETTGTAGFTGAAVERRTQLAYRVENRHTTPITLQVIDTAPVSRDAKIEVESRYAPS HHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCCEEEECCCCCCC PLTTAWEGTAGIVAWQQPLAPGAGARFTAEHVVRHGKDVELNENRR CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SSACPGTAHSTLSTLSAPPVPPPRRARRAAAACLWLAAAGMASAQERPSVVASRITQVT CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEE VAPGVATIERSARIAAGARSATFACLPASLDPDSLQISADAGVRVGEFKVTTEDRDVAAD ECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCEEEEEEEEECCCCHHHHH CASPLDDRVRALEDQIAGVQAEIAALRRADRYLDHLAGGTSADGAPRDGQGGPPAAAATV HCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH APAVLPAQIPATAEALRKTSADTLVRLQPLLRRQEALERDLKPLRAERDRTAGGPRAKVV HHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE SVAVNLATDRDAGLRLSYQVRGPGWQPAYRARLDTATGAVVLERLAVVAQRSGEDWNDVR EEEEEEECCCCCCEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEE LVLTTQAPARATAGPRPGTWTVDVAPPPEPQYRLARLPAAMAMAAPAPAPMAESADAGEE EEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCC PLPRFDVVALAGSYATRFEVPRRLSVPASGQRTTLLLGTHDAGARLVTRTVPAQRETAYL CCCCEEEEEECCCCHHHHCCCCEECCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEE VAEIAPPAGVWPAGAVGLYRDGAFVGQGRLDFASATDAGAPGGRTVPLWFGPDDLVQVHA EEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH EPLRETTGTAGFTGAAVERRTQLAYRVENRHTTPITLQVIDTAPVSRDAKIEVESRYAPS HHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCCEEEECCCCCCC PLTTAWEGTAGIVAWQQPLAPGAGARFTAEHVVRHGKDVELNENRR CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA