| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599322
Identifier: 120599322
GI number: 120599322
Start: 2879405
End: 2879989
Strand: Direct
Name: 120599322
Synonym: Sputw3181_2518
Alternate gene names: NA
Gene position: 2879405-2879989 (Clockwise)
Preceding gene: 120599321
Following gene: 120599323
Centisome position: 61.15
GC content: 45.47
Gene sequence:
>585_bases ATGAGCCAACAAATCGAAATCCCTGCATTCTTGCTTGAAATGTCACAGCAAATGCACCAGCAGGATAACCGCTGCACCGC CGAACCTATCTGGCAAGTTCGCTGCAAGCGCTATTTGCCTACCGAAGAAGGCTATGACGAACATCACTGGGAGATTGTTG ATACCGATGGCGATGCCACCGCGCTATATCGCTCTGATAAATGCGATAAGCAAGCACTGGCCGAATGGTTAGCTGAAAAC GACTTGGGATGGTGCGATCAATGGTTAGAAGCTATTGATGTAAGCGCTGACATTGATAATCTTGAGGCTTTTTCAGAAAT CTTTATTGAATCATTTATCGACGACTTTAATGTTGAGTCAGATTACGACCAGCTACCTGATCCGCTTAAAAAGTTTCACC TTCAAGAAACGGAAGAAGTTATTAAAACCTGTTTTACCGAAGCCGATGCACGGGCATTTATCGCCCGTAAGCAGCACGAC TATCCAAAGCTTTACACCTATGTCGAATCAATGGTGTTTTGCCCGCAGATGATCCAATTACGCCATTGGATCATGTCACT CACCACGCCAGAGGTGAAAGCATGA
Upstream 100 bases:
>100_bases TTGGATGTTGCCAGGCGGCAAATTCACCACCAATCGCGCCGTTGCCATCCGTGCTGCCAAAGGCCTGCACCGTTTTCTGG TTAAAAGATAAGGACGTCAC
Downstream 100 bases:
>100_bases GCCAATTATTCTACCTGCGCGATTCGCGCACCAATGTCGGCAGCACTTGCCTTTTTTGGGCTAAAGATGGTTGCGGCTAC ACCAGCGACTTAAACAAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MSQQIEIPAFLLEMSQQMHQQDNRCTAEPIWQVRCKRYLPTEEGYDEHHWEIVDTDGDATALYRSDKCDKQALAEWLAEN DLGWCDQWLEAIDVSADIDNLEAFSEIFIESFIDDFNVESDYDQLPDPLKKFHLQETEEVIKTCFTEADARAFIARKQHD YPKLYTYVESMVFCPQMIQLRHWIMSLTTPEVKA
Sequences:
>Translated_194_residues MSQQIEIPAFLLEMSQQMHQQDNRCTAEPIWQVRCKRYLPTEEGYDEHHWEIVDTDGDATALYRSDKCDKQALAEWLAEN DLGWCDQWLEAIDVSADIDNLEAFSEIFIESFIDDFNVESDYDQLPDPLKKFHLQETEEVIKTCFTEADARAFIARKQHD YPKLYTYVESMVFCPQMIQLRHWIMSLTTPEVKA >Mature_193_residues SQQIEIPAFLLEMSQQMHQQDNRCTAEPIWQVRCKRYLPTEEGYDEHHWEIVDTDGDATALYRSDKCDKQALAEWLAEND LGWCDQWLEAIDVSADIDNLEAFSEIFIESFIDDFNVESDYDQLPDPLKKFHLQETEEVIKTCFTEADARAFIARKQHDY PKLYTYVESMVFCPQMIQLRHWIMSLTTPEVKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22868; Mature: 22737
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQQIEIPAFLLEMSQQMHQQDNRCTAEPIWQVRCKRYLPTEEGYDEHHWEIVDTDGDAT CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCH ALYRSDKCDKQALAEWLAENDLGWCDQWLEAIDVSADIDNLEAFSEIFIESFIDDFNVES HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC DYDQLPDPLKKFHLQETEEVIKTCFTEADARAFIARKQHDYPKLYTYVESMVFCPQMIQL CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH RHWIMSLTTPEVKA HHHHHHHCCCCCCC >Mature Secondary Structure SQQIEIPAFLLEMSQQMHQQDNRCTAEPIWQVRCKRYLPTEEGYDEHHWEIVDTDGDAT CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCH ALYRSDKCDKQALAEWLAENDLGWCDQWLEAIDVSADIDNLEAFSEIFIESFIDDFNVES HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC DYDQLPDPLKKFHLQETEEVIKTCFTEADARAFIARKQHDYPKLYTYVESMVFCPQMIQL CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH RHWIMSLTTPEVKA HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA