| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599323
Identifier: 120599323
GI number: 120599323
Start: 2879986
End: 2880705
Strand: Direct
Name: 120599323
Synonym: Sputw3181_2519
Alternate gene names: NA
Gene position: 2879986-2880705 (Clockwise)
Preceding gene: 120599322
Following gene: 120599324
Centisome position: 61.17
GC content: 48.75
Gene sequence:
>720_bases ATGAGCCAATTATTCTACCTGCGCGATTCGCGCACCAATGTCGGCAGCACTTGCCTTTTTTGGGCTAAAGATGGTTGCGG CTACACCAGCGACTTAAACAAGGCCCATGTTTACACCATTGAAGAAGCACAGCGCCAATTCAATAGCCGTCACACTGACG TTCCGCTATGCAAAGAGCTTGTGGATGAATTGGCAACCGTGCGCGTTGATTGCCAGTACCTAGGCGATTCTGGCGAAAAG TCAGAATGTGATGAATACGTTATTTGTATTAATGGCGACTGGGATGGCAACGATGTTTATTGGCTATCTCAATTTGGCTT TAGCGATATTAATTACAACACCGCGACGATATTTAGTTATCAAGATGCACTAGATATTCAGTCGCTTGGGGTTGGCATTA ACACCACTATCTACGCCAAGGCTGATATCGATGCCATCGCTCGCCGTACTTTTCAAGCCGCCAACGTCAACGAACGCCGC ATGATCACCGCTGCAGGCATTCGCAAACCCAAACGCCCACGCACTCGCCAAACCACAGGTAAAGCTCGTGGCAATTGCCC ACATTGTGGCTGTATCACTTGGGGTTTCAATCCTTACGAAGCTTACACCTGCGCCCAAGCCGATGCCGAAGACCGTGGCT TTAAACTTTATGGCAATTGCAAAGAGGTTAAGCGCGCCAAGCAAATAAGCAAGGCCAAGACTGAAGGAGAAGCAGCATGA
Upstream 100 bases:
>100_bases ATCCAAAGCTTTACACCTATGTCGAATCAATGGTGTTTTGCCCGCAGATGATCCAATTACGCCATTGGATCATGTCACTC ACCACGCCAGAGGTGAAAGC
Downstream 100 bases:
>100_bases ACCTTCTCCTTGCAGGCTTTGAATCACCAAAGCGCATAGAGCTAATGCTGTCACTGACCAAAATCAGCTCAGAAAATCTA ATCAAAGCCCTGACGCTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MSQLFYLRDSRTNVGSTCLFWAKDGCGYTSDLNKAHVYTIEEAQRQFNSRHTDVPLCKELVDELATVRVDCQYLGDSGEK SECDEYVICINGDWDGNDVYWLSQFGFSDINYNTATIFSYQDALDIQSLGVGINTTIYAKADIDAIARRTFQAANVNERR MITAAGIRKPKRPRTRQTTGKARGNCPHCGCITWGFNPYEAYTCAQADAEDRGFKLYGNCKEVKRAKQISKAKTEGEAA
Sequences:
>Translated_239_residues MSQLFYLRDSRTNVGSTCLFWAKDGCGYTSDLNKAHVYTIEEAQRQFNSRHTDVPLCKELVDELATVRVDCQYLGDSGEK SECDEYVICINGDWDGNDVYWLSQFGFSDINYNTATIFSYQDALDIQSLGVGINTTIYAKADIDAIARRTFQAANVNERR MITAAGIRKPKRPRTRQTTGKARGNCPHCGCITWGFNPYEAYTCAQADAEDRGFKLYGNCKEVKRAKQISKAKTEGEAA >Mature_238_residues SQLFYLRDSRTNVGSTCLFWAKDGCGYTSDLNKAHVYTIEEAQRQFNSRHTDVPLCKELVDELATVRVDCQYLGDSGEKS ECDEYVICINGDWDGNDVYWLSQFGFSDINYNTATIFSYQDALDIQSLGVGINTTIYAKADIDAIARRTFQAANVNERRM ITAAGIRKPKRPRTRQTTGKARGNCPHCGCITWGFNPYEAYTCAQADAEDRGFKLYGNCKEVKRAKQISKAKTEGEAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26835; Mature: 26704
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQLFYLRDSRTNVGSTCLFWAKDGCGYTSDLNKAHVYTIEEAQRQFNSRHTDVPLCKEL CCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHH VDELATVRVDCQYLGDSGEKSECDEYVICINGDWDGNDVYWLSQFGFSDINYNTATIFSY HHHHHHEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEE QDALDIQSLGVGINTTIYAKADIDAIARRTFQAANVNERRMITAAGIRKPKRPRTRQTTG CCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCC KARGNCPHCGCITWGFNPYEAYTCAQADAEDRGFKLYGNCKEVKRAKQISKAKTEGEAA CCCCCCCCCEEEEECCCCHHEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SQLFYLRDSRTNVGSTCLFWAKDGCGYTSDLNKAHVYTIEEAQRQFNSRHTDVPLCKEL CCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHH VDELATVRVDCQYLGDSGEKSECDEYVICINGDWDGNDVYWLSQFGFSDINYNTATIFSY HHHHHHEEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEE QDALDIQSLGVGINTTIYAKADIDAIARRTFQAANVNERRMITAAGIRKPKRPRTRQTTG CCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCC KARGNCPHCGCITWGFNPYEAYTCAQADAEDRGFKLYGNCKEVKRAKQISKAKTEGEAA CCCCCCCCCEEEEECCCCHHEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA