Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

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The map label for this gene is 120599233

Identifier: 120599233

GI number: 120599233

Start: 2801815

End: 2803488

Strand: Direct

Name: 120599233

Synonym: Sputw3181_2429

Alternate gene names: NA

Gene position: 2801815-2803488 (Clockwise)

Preceding gene: 120599232

Following gene: 120599234

Centisome position: 59.51

GC content: 48.27

Gene sequence:

>1674_bases
ATGCGACGTCTGTATCCGTTATGCGCGCTAGCCTTGCTCAGTGCCTGTAGCCCTCATTCGGCACAACCTGATACCAATAA
CAGTGCCGCACTTAAACCCGTGCAAATGAATGAAGCACGTTTTAGAAATGATATTAAAGCCCTATCATCCGATGAATTTG
AAGGTCGTGCGCCCACCACTCACGGTGAAAAACTCACCTTGGATTATTTGACCAAAGCCTTTACAGAGATGGGACTCAAG
GGCGCGTACCAAGGCAGCTTTTTACAACCTGTGCCTATGGTGAGCTATACAGCAGATGAAGCGCAGCAAGTCACGCTGGC
AGGGTTACCCTTTAAATACCGACAAGATATCGTCCTCAACAGTCGCCACGATAACGGTGGTATTCGTGTTGAGAACGCAC
CATTAGTCTTCGTCGGCTATGGGGTGAACGCCCCTGAATATGGTTGGAATGATTACCAAGATCTCGATATGAAAGGCAAA
ATCGCGGTGATCTTAGTGAACGATCCCGGCTTTGCTCGCCCTGACTCAGGGAAATTTACTGGTAAAGCCATGACCTATTA
CGGCCGCTGGAGCTACAAATTTGAGGAAGCGAGCCGCCAAGGCGCCCTTGGCGCACTGATTATCCATGATACCGAGCCCG
CCTCTTACCCTTGGTCCGTGATAGAGAATAGTTGGACTGGACCACAGCAAGATCTGGTGCTAAGTAAAGCCGAGCAAGAT
AGTCGAGTGCAAGTCGAAGGCTGGCTCACCTTAGATGCCGCGACGCAAATTTTTGATAAAGCGGGTTTATCACTGCCTAA
TTTAATGGCGCGCGCCGCCGATAGCCCAATCAATTTACCCCTTGAGCAAACGGCCAACATCGCTTTTAAAAACAAAGCCG
AATATGCGAATAGCTACAATGTGGTCGCCACAATTCCCGGCAACACACAAGCCGATGAACAAATCCTCTTTACCGCCCAT
TGGGATCACATAGGCAAAGATGAAACGAAAACAGGCGATCAAATTTATAACGGCGCCATGGATAATGCCTCGGGTATTGC
AGGCATTTTAGAAATCGCCAGACAACTTGTCGATAATGTCAAACAAGGCCACGGTTTAGCCCGATCGGTCACCTTTATTG
CTACCACAGGTGAAGAACAGGGCTTACTCGGTTCGCGCTATTATGCCGCTAATCCACTTTATCCGATCGACAAAACCGTG
GCAGTGCTAAACCTAGACAGCACCAATATCTACGGTAAAACCAAAGACTTTACCATTGTCGGTAAAGGTAAATCAGAGTT
AGAAACCTACCTTATCGATGCAGCTAAACAACAAAATCGTATCCCCATGGGTGAAAAAAATCCCGCTTCGGGCGGTTTTT
TCCGCTCAGATCATTTCAGCTTTGCCAAACTGGGCGTACCCGCAGTCTTTGCCGGCGGCGGTAGCGATCCCATAGATGAG
GCCACGGCTGCCTATAAAACCCAGATGCAAGCCACAATGAAAGGCTGCTATCACAATGTCTGCGATGAATATCGTGAAGA
TTGGGATTTAAGTGGCGCGCTGCAAGACTTGCAAATCTACTACCAAGTCACGCGCACATTAGGCAACAGTAAAGATTGGC
CGGGATATTATCAAGGCACAGAATTTAATCACCTGCGCCCAGCCAAAACAACACTGGTAACAGACGCAAAATAA

Upstream 100 bases:

>100_bases
TTTGCACAGTGTTCGGCCTTGTAGCTTCCCACCACTTGCTTCATCATAAACTGTCATATCACCTTAAAAAACACGACAAA
AACAACAGTAGGATTAACCT

Downstream 100 bases:

>100_bases
CAGGCTAAGTCTGTGGCTTCTTACGAGAGGCAACTTAGTTAGTCGTCTCTTATTAACGCCCGCTAGTCGCACCTGCGAAA
TAAAGCGCCTCCTCCGCCAG

Product: peptidase M28

Products: NA

Alternate protein names: Aminopeptidase; Peptidase; M28 Family Peptidase; Peptidase Family M; Glutamate Carboxypeptidase II; Aminopeptidase Family; M28 Family Aminopeptidase; M23B Family Peptidase; M20/M25/M40 Family Peptidase; Protein Containing Aminopeptidase Domain; Component Of l Biopolymer Transport System; WD40-Like Beta Propeller; PDZ Domain-Containing Protein

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MRRLYPLCALALLSACSPHSAQPDTNNSAALKPVQMNEARFRNDIKALSSDEFEGRAPTTHGEKLTLDYLTKAFTEMGLK
GAYQGSFLQPVPMVSYTADEAQQVTLAGLPFKYRQDIVLNSRHDNGGIRVENAPLVFVGYGVNAPEYGWNDYQDLDMKGK
IAVILVNDPGFARPDSGKFTGKAMTYYGRWSYKFEEASRQGALGALIIHDTEPASYPWSVIENSWTGPQQDLVLSKAEQD
SRVQVEGWLTLDAATQIFDKAGLSLPNLMARAADSPINLPLEQTANIAFKNKAEYANSYNVVATIPGNTQADEQILFTAH
WDHIGKDETKTGDQIYNGAMDNASGIAGILEIARQLVDNVKQGHGLARSVTFIATTGEEQGLLGSRYYAANPLYPIDKTV
AVLNLDSTNIYGKTKDFTIVGKGKSELETYLIDAAKQQNRIPMGEKNPASGGFFRSDHFSFAKLGVPAVFAGGGSDPIDE
ATAAYKTQMQATMKGCYHNVCDEYREDWDLSGALQDLQIYYQVTRTLGNSKDWPGYYQGTEFNHLRPAKTTLVTDAK

Sequences:

>Translated_557_residues
MRRLYPLCALALLSACSPHSAQPDTNNSAALKPVQMNEARFRNDIKALSSDEFEGRAPTTHGEKLTLDYLTKAFTEMGLK
GAYQGSFLQPVPMVSYTADEAQQVTLAGLPFKYRQDIVLNSRHDNGGIRVENAPLVFVGYGVNAPEYGWNDYQDLDMKGK
IAVILVNDPGFARPDSGKFTGKAMTYYGRWSYKFEEASRQGALGALIIHDTEPASYPWSVIENSWTGPQQDLVLSKAEQD
SRVQVEGWLTLDAATQIFDKAGLSLPNLMARAADSPINLPLEQTANIAFKNKAEYANSYNVVATIPGNTQADEQILFTAH
WDHIGKDETKTGDQIYNGAMDNASGIAGILEIARQLVDNVKQGHGLARSVTFIATTGEEQGLLGSRYYAANPLYPIDKTV
AVLNLDSTNIYGKTKDFTIVGKGKSELETYLIDAAKQQNRIPMGEKNPASGGFFRSDHFSFAKLGVPAVFAGGGSDPIDE
ATAAYKTQMQATMKGCYHNVCDEYREDWDLSGALQDLQIYYQVTRTLGNSKDWPGYYQGTEFNHLRPAKTTLVTDAK
>Mature_557_residues
MRRLYPLCALALLSACSPHSAQPDTNNSAALKPVQMNEARFRNDIKALSSDEFEGRAPTTHGEKLTLDYLTKAFTEMGLK
GAYQGSFLQPVPMVSYTADEAQQVTLAGLPFKYRQDIVLNSRHDNGGIRVENAPLVFVGYGVNAPEYGWNDYQDLDMKGK
IAVILVNDPGFARPDSGKFTGKAMTYYGRWSYKFEEASRQGALGALIIHDTEPASYPWSVIENSWTGPQQDLVLSKAEQD
SRVQVEGWLTLDAATQIFDKAGLSLPNLMARAADSPINLPLEQTANIAFKNKAEYANSYNVVATIPGNTQADEQILFTAH
WDHIGKDETKTGDQIYNGAMDNASGIAGILEIARQLVDNVKQGHGLARSVTFIATTGEEQGLLGSRYYAANPLYPIDKTV
AVLNLDSTNIYGKTKDFTIVGKGKSELETYLIDAAKQQNRIPMGEKNPASGGFFRSDHFSFAKLGVPAVFAGGGSDPIDE
ATAAYKTQMQATMKGCYHNVCDEYREDWDLSGALQDLQIYYQVTRTLGNSKDWPGYYQGTEFNHLRPAKTTLVTDAK

Specific function: Unknown

COG id: COG2234

COG function: function code R; Predicted aminopeptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61210; Mature: 61210

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLYPLCALALLSACSPHSAQPDTNNSAALKPVQMNEARFRNDIKALSSDEFEGRAPTT
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECEEECCHHHHHHHHHHHCCCCCCCCCCCC
HGEKLTLDYLTKAFTEMGLKGAYQGSFLQPVPMVSYTADEAQQVTLAGLPFKYRQDIVLN
CCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCHHCCCEEEE
SRHDNGGIRVENAPLVFVGYGVNAPEYGWNDYQDLDMKGKIAVILVNDPGFARPDSGKFT
CCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
GKAMTYYGRWSYKFEEASRQGALGALIIHDTEPASYPWSVIENSWTGPQQDLVLSKAEQD
CEEEEEEECEEEEHHHHCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCHHHHEECCCCC
SRVQVEGWLTLDAATQIFDKAGLSLPNLMARAADSPINLPLEQTANIAFKNKAEYANSYN
CEEEEEEEEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHCCEEECCCHHHCCCCC
VVATIPGNTQADEQILFTAHWDHIGKDETKTGDQIYNGAMDNASGIAGILEIARQLVDNV
EEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
KQGHGLARSVTFIATTGEEQGLLGSRYYAANPLYPIDKTVAVLNLDSTNIYGKTKDFTIV
HHCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
GKGKSELETYLIDAAKQQNRIPMGEKNPASGGFFRSDHFSFAKLGVPAVFAGGGSDPIDE
ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHCCCCEEEECCCCCCHHH
ATAAYKTQMQATMKGCYHNVCDEYREDWDLSGALQDLQIYYQVTRTLGNSKDWPGYYQGT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
EFNHLRPAKTTLVTDAK
CCCCCCCCCEEEEECCC
>Mature Secondary Structure
MRRLYPLCALALLSACSPHSAQPDTNNSAALKPVQMNEARFRNDIKALSSDEFEGRAPTT
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECEEECCHHHHHHHHHHHCCCCCCCCCCCC
HGEKLTLDYLTKAFTEMGLKGAYQGSFLQPVPMVSYTADEAQQVTLAGLPFKYRQDIVLN
CCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCHHCCCEEEE
SRHDNGGIRVENAPLVFVGYGVNAPEYGWNDYQDLDMKGKIAVILVNDPGFARPDSGKFT
CCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
GKAMTYYGRWSYKFEEASRQGALGALIIHDTEPASYPWSVIENSWTGPQQDLVLSKAEQD
CEEEEEEECEEEEHHHHCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCHHHHEECCCCC
SRVQVEGWLTLDAATQIFDKAGLSLPNLMARAADSPINLPLEQTANIAFKNKAEYANSYN
CEEEEEEEEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHCCEEECCCHHHCCCCC
VVATIPGNTQADEQILFTAHWDHIGKDETKTGDQIYNGAMDNASGIAGILEIARQLVDNV
EEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
KQGHGLARSVTFIATTGEEQGLLGSRYYAANPLYPIDKTVAVLNLDSTNIYGKTKDFTIV
HHCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
GKGKSELETYLIDAAKQQNRIPMGEKNPASGGFFRSDHFSFAKLGVPAVFAGGGSDPIDE
ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHCCCCEEEECCCCCCHHH
ATAAYKTQMQATMKGCYHNVCDEYREDWDLSGALQDLQIYYQVTRTLGNSKDWPGYYQGT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
EFNHLRPAKTTLVTDAK
CCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA