Click here to switch to the map view.

The map label for this gene is nagD [H]

Identifier: 120599232

GI number: 120599232

Start: 2800869

End: 2801615

Strand: Direct

Name: nagD [H]

Synonym: Sputw3181_2428

Alternate gene names: 120599232

Gene position: 2800869-2801615 (Clockwise)

Preceding gene: 120599231

Following gene: 120599233

Centisome position: 59.49

GC content: 47.52

Gene sequence:

>747_bases
ATGAAAAATATTATTTGTGATATCGATGGTGTACTACTGCACGACAATAAACTGATCCCCGGCAGCGACAAATTTATCCA
ACGTATTTTAGCGCAAGGCAATCCATTAGTCGTTCTCACCAACTATCCAGTACAAACGGGTAAGGATCTGCAAAACCGCT
TAAGTGCTGCCGGTATGGATATTCCTGAAGAATGTTTTTATACCTCTGCGATGGCCACCGCCGACTTTTTAAAACACCAA
GAAGGCAGCAAGGCCTTTGTTATCGGTGAAGGCGCCCTCACCCATGAACTCTACAAAGCGGGCTTTACCATTACCGATAT
TAATCCCGACTTTGTCATTATTGGAGAAACGCGTTCCTATAACTGGGAGATGATCCATAAGGCAGCAGGTTTTGTGGCTC
GCGGTGCGCGCTTTATTGCCACCAATCCAGATACTCACGGCCCAGCATTTAGTCCTGCATGTGGCGCGCTATGCTCTCCC
ATCGAACGTATTACCGGTAAAAAACCCTTCTACGTGGGCAAACCGAGCGCCTGGATTATTCGCTCAGCGCTTAATCATAT
TGATGGCCACTCGGAAGATACTGTGATCATAGGCGATAATATGCGCACCGATATTTTGGCGGGCTTCCAAGCTGGGCTTG
AGACCATTCTGGTCACTAGCGGCGTGAGTAAGCTCGAAGATATTGATAAAGAGCCCTTCCGACCAAACCATGTGTTTGCC
TGCGCGGGCGATATAGACGTTGTTTAA

Upstream 100 bases:

>100_bases
TTTTAACTATTTTCTACAAAAGCATTGTTTTTTAGGACAATGTGGCATTAGATAACCCAACAAAAAGTGAATTTTGCTCG
GCATGACAAGAGACTATTAG

Downstream 100 bases:

>100_bases
TCATTCGACAATGAACCGAGCCTCTTAGCACTATCGACCTCTGCAATAAACCCAGCCCAAAGGTATATTGCAGAGGCTAA
AGCAACATTAAGTAACATAT

Product: UMP phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKNIICDIDGVLLHDNKLIPGSDKFIQRILAQGNPLVVLTNYPVQTGKDLQNRLSAAGMDIPEECFYTSAMATADFLKHQ
EGSKAFVIGEGALTHELYKAGFTITDINPDFVIIGETRSYNWEMIHKAAGFVARGARFIATNPDTHGPAFSPACGALCSP
IERITGKKPFYVGKPSAWIIRSALNHIDGHSEDTVIIGDNMRTDILAGFQAGLETILVTSGVSKLEDIDKEPFRPNHVFA
CAGDIDVV

Sequences:

>Translated_248_residues
MKNIICDIDGVLLHDNKLIPGSDKFIQRILAQGNPLVVLTNYPVQTGKDLQNRLSAAGMDIPEECFYTSAMATADFLKHQ
EGSKAFVIGEGALTHELYKAGFTITDINPDFVIIGETRSYNWEMIHKAAGFVARGARFIATNPDTHGPAFSPACGALCSP
IERITGKKPFYVGKPSAWIIRSALNHIDGHSEDTVIIGDNMRTDILAGFQAGLETILVTSGVSKLEDIDKEPFRPNHVFA
CAGDIDVV
>Mature_248_residues
MKNIICDIDGVLLHDNKLIPGSDKFIQRILAQGNPLVVLTNYPVQTGKDLQNRLSAAGMDIPEECFYTSAMATADFLKHQ
EGSKAFVIGEGALTHELYKAGFTITDINPDFVIIGETRSYNWEMIHKAAGFVARGARFIATNPDTHGPAFSPACGALCSP
IERITGKKPFYVGKPSAWIIRSALNHIDGHSEDTVIIGDNMRTDILAGFQAGLETILVTSGVSKLEDIDKEPFRPNHVFA
CAGDIDVV

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI10092677, Length=248, Percent_Identity=24.1935483870968, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI108796653, Length=261, Percent_Identity=27.2030651340996, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI14149777, Length=247, Percent_Identity=25.1012145748988, Blast_Score=78, Evalue=6e-15,
Organism=Escherichia coli, GI1786890, Length=248, Percent_Identity=70.9677419354839, Blast_Score=389, Evalue=1e-109,
Organism=Caenorhabditis elegans, GI17562458, Length=286, Percent_Identity=25.5244755244755, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560956, Length=286, Percent_Identity=25.5244755244755, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17558880, Length=265, Percent_Identity=26.0377358490566, Blast_Score=82, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6319965, Length=234, Percent_Identity=23.0769230769231, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24666141, Length=254, Percent_Identity=28.3464566929134, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24656326, Length=254, Percent_Identity=23.6220472440945, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24656330, Length=251, Percent_Identity=25.0996015936255, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 26960; Mature: 26960

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIICDIDGVLLHDNKLIPGSDKFIQRILAQGNPLVVLTNYPVQTGKDLQNRLSAAGMD
CCCEEEECCCEEEECCEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCC
IPEECFYTSAMATADFLKHQEGSKAFVIGEGALTHELYKAGFTITDINPDFVIIGETRSY
CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCEEEECCCCEEEEECCCCC
NWEMIHKAAGFVARGARFIATNPDTHGPAFSPACGALCSPIERITGKKPFYVGKPSAWII
CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHH
RSALNHIDGHSEDTVIIGDNMRTDILAGFQAGLETILVTSGVSKLEDIDKEPFRPNHVFA
HHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHEEECCCCHHHHHCCCCCCCCCEEEE
CAGDIDVV
ECCCCCCC
>Mature Secondary Structure
MKNIICDIDGVLLHDNKLIPGSDKFIQRILAQGNPLVVLTNYPVQTGKDLQNRLSAAGMD
CCCEEEECCCEEEECCEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCC
IPEECFYTSAMATADFLKHQEGSKAFVIGEGALTHELYKAGFTITDINPDFVIIGETRSY
CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCEEEECCCCEEEEECCCCC
NWEMIHKAAGFVARGARFIATNPDTHGPAFSPACGALCSPIERITGKKPFYVGKPSAWII
CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHH
RSALNHIDGHSEDTVIIGDNMRTDILAGFQAGLETILVTSGVSKLEDIDKEPFRPNHVFA
HHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHEEECCCCHHHHHCCCCCCCCCEEEE
CAGDIDVV
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]