| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120599121
Identifier: 120599121
GI number: 120599121
Start: 2670067
End: 2670825
Strand: Direct
Name: 120599121
Synonym: Sputw3181_2317
Alternate gene names: NA
Gene position: 2670067-2670825 (Clockwise)
Preceding gene: 120599120
Following gene: 120599122
Centisome position: 56.71
GC content: 49.54
Gene sequence:
>759_bases ATGGACTGGCTTATGATTGCACTCGCTGGCTTTTTAGGCGGCATGCTCAATGCAGTTGCCGGTGGTGGCAGTTTTATTAC CCTATTAGTGTTAGTGTTTGTCGGGGTTCCACCGATTGCGGCGAATGCCACGGGGACAGCCGCGCTGCTGCCCGGTTATA TCGCCAGCGCATGGCGTTTTAGAAAGGATATCGAATATCCGGCGAGTCTCAGCCTTAAGGGTCTGATCTTAATTGCTTTA ATCGGTGGCAGTATTGGCGCAGGTATTTTGCTGACCACCAGCGAGCAAGTCTTCGCAAAACTGATCCCTTGGCTGATTCT ACTGGCCACCGCGGCCTTTATTGTTGGCCCTTGGTTGCTCAAACGAAGAATCGCTGAGCAAGGCGAAAACACCTCTACGC CAATGTTAAGTCCGATAATGGCACTGATGCTACTAGCGGCTGTGTGTATCTATGGCGGTTATTTTAATGGTGGCTTAGGT ATTATTCTGCTGGCGAGTTTTGGTCTAATGGGGCAAACAAACCTACATGGGATGAACGGGCTTAAAAATCTGATTTCTGC CCTGCTTACCACGATTGCAGTGGTGATTTATGCGGCAGGAGATGCTATCGATAGCCAGTATCTGTTGCTGCTTGCTGTTA TGGCAATTATCGGTGGTTATGTAGGCGCGGCAATGGCTTATCGTATTTCACAGCCCCTGTTACGCGGTTTTATTGTGATC GTCGGTCTAGCGATGGCGCTCGGCTTTTTTATCCGCTAA
Upstream 100 bases:
>100_bases AAATCATCCTGTTAGGGTGAGTGCTTAGATTGACTCATAATAACAGACACATTTTTAGCGCTCTGTTTAACTCTCTCATT GCCCAAAAGGAGCGGTATCT
Downstream 100 bases:
>100_bases CGATGCCCCCAGTTTAACCGTTTTCGATTCAACTGTTGACAGGTTAATTGCCCTTAAATGACTGACTTGTTACTCTGAAC CCTCACTGAGGATGAATAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRFRKDIEYPASLSLKGLILIAL IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLG IILLASFGLMGQTNLHGMNGLKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI VGLAMALGFFIR
Sequences:
>Translated_252_residues MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRFRKDIEYPASLSLKGLILIAL IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLG IILLASFGLMGQTNLHGMNGLKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI VGLAMALGFFIR >Mature_252_residues MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRFRKDIEYPASLSLKGLILIAL IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLG IILLASFGLMGQTNLHGMNGLKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI VGLAMALGFFIR
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26288; Mature: 26288
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRF CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH RKDIEYPASLSLKGLILIALIGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLL HHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH KRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLGIILLASFGLMGQTNLHGMNG HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHH LKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGLAMALGFFIR HHHHHHHHHHCC >Mature Secondary Structure MDWLMIALAGFLGGMLNAVAGGGSFITLLVLVFVGVPPIAANATGTAALLPGYIASAWRF CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH RKDIEYPASLSLKGLILIALIGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLL HHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH KRRIAEQGENTSTPMLSPIMALMLLAAVCIYGGYFNGGLGIILLASFGLMGQTNLHGMNG HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHH LKNLISALLTTIAVVIYAAGDAIDSQYLLLLAVMAIIGGYVGAAMAYRISQPLLRGFIVI HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGLAMALGFFIR HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA