| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598627
Identifier: 120598627
GI number: 120598627
Start: 2085007
End: 2086371
Strand: Direct
Name: 120598627
Synonym: Sputw3181_1811
Alternate gene names: NA
Gene position: 2085007-2086371 (Clockwise)
Preceding gene: 120598626
Following gene: 120598628
Centisome position: 44.28
GC content: 44.25
Gene sequence:
>1365_bases ATGAAGAAACTGACGATATTGGCGAGTGCAGTCATAATGGCACTTGCAGCGCCTGTTGTAATGGCGAAAGTCTCAGAGGC TGATGCAGCAAAACTAGGTAATGAATTAACGCCATTGGGTGCTGAAAAAGCGGGTAATGCCGATGGCTCTATTCCGGCGT GGGATGGTGGTATCACGCAACCTGTTGCAGGCTATACCAAAGGAATGCATCATCCCGATCCTTTTCCTGAGGATAAAATA GAATTCACCATTACGAATGCTAACAAAGCAGAATATAAAGATTTTTTAACGCCAGGTCAGCTACGGTTATTTGAACTTTA TCCTGACACATACAAAATGAATGTCTACAAGACTCGCCGAAGCGCATCCGTGCCTCAGTTTGTCTATGATGCCACTAAAG CAAACGCGACTCGCGCTGAGTTAGTCGCACAAGGAAATGGCTTGTCAGGTGCATCGATTGGTATTCCATTTCCTATTCCA ACTAATGGGTTAGAGGCTATTTGGAACCATATTTTACGTTTCCGAGGGGTGGATGTTGAGACTACTCGTAGCCAAGCAGC TCCGACCGCTGATGGGAACTTTACCTTGGTTGAAATGGCTGAAGAGCTTCGTTTTGAATACTCGCGTCCTGAGATCACCT TAGAACAGTTAAAAGCCAACAACACCTTATTCTATTTCAAGCAAGTGGTGACTCAACCCGCTCGTTTGGCTGGAACAGCC CTCTTGGTTAAAGAAACCATGGATCAAGAAGCATTGCCACGCCAAGCTTGGACCTATAACACGGGGCAGCGTCGTGTACG TAAGGCACCAAACGTGGCCTTTGATACTCCAGGTACGGTTTCGGACGGTTTACGCACTACGGATGACTTCGATATGTTTA ACGGCTCTCCAGTGCGTTATAACTGGGAGTTGATTGGCAAGAAAGAAATTTATATTCCGTATAATGACTATAAATTGCAC TCAGACAAGCTGAAATATAACCAAATTTTAAAAGCGGGTCATATTAATCCTGAGTATGTTCGTTGGGAAAAACACCGTGT TTGGGAAGTGAAGGCGACATTAAAACCAGGAATGCGCCACATTTATAAAACCCGTGTGATGTACCTAGATGAAGATTCAT GGCAAGTATCAGTTGCCGATTTATATGATAACCGTGATGAGTTATACCGTGTCGCCGTTGCCCATGGTTTGAACTATTAC GAAGTACCGACGCAATGGAATACTTTAGAGGTTTTCCATGATTTACAGTCTCGTCGTTATTTGGTGATGGGCTTAGACAA CCAAAGTGGTATGTATAACTTTGATGCCAAATTGAGCGAAGCAAACTTTACCCCAGACGCCTTACGTCGTGAAGGTATTC GTTAA
Upstream 100 bases:
>100_bases TATAACAACTTCTTTGGCGGTGTGGGTACGACGAATGCGATGGCAGATCGTGATTATGTTTCATTCAATATCAAGTATTC GATCTAAAAGGATTAAAACA
Downstream 100 bases:
>100_bases TCGCCAAATATTAAGGGGCGCTAAGCGCCCCTCATTAGTTTAAGGAAGTTTGTATGTCGTTTCGCATCCTTCACTGTGTT ACTGCGCTCAGTCTCAGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MKKLTILASAVIMALAAPVVMAKVSEADAAKLGNELTPLGAEKAGNADGSIPAWDGGITQPVAGYTKGMHHPDPFPEDKI EFTITNANKAEYKDFLTPGQLRLFELYPDTYKMNVYKTRRSASVPQFVYDATKANATRAELVAQGNGLSGASIGIPFPIP TNGLEAIWNHILRFRGVDVETTRSQAAPTADGNFTLVEMAEELRFEYSRPEITLEQLKANNTLFYFKQVVTQPARLAGTA LLVKETMDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDFDMFNGSPVRYNWELIGKKEIYIPYNDYKLH SDKLKYNQILKAGHINPEYVRWEKHRVWEVKATLKPGMRHIYKTRVMYLDEDSWQVSVADLYDNRDELYRVAVAHGLNYY EVPTQWNTLEVFHDLQSRRYLVMGLDNQSGMYNFDAKLSEANFTPDALRREGIR
Sequences:
>Translated_454_residues MKKLTILASAVIMALAAPVVMAKVSEADAAKLGNELTPLGAEKAGNADGSIPAWDGGITQPVAGYTKGMHHPDPFPEDKI EFTITNANKAEYKDFLTPGQLRLFELYPDTYKMNVYKTRRSASVPQFVYDATKANATRAELVAQGNGLSGASIGIPFPIP TNGLEAIWNHILRFRGVDVETTRSQAAPTADGNFTLVEMAEELRFEYSRPEITLEQLKANNTLFYFKQVVTQPARLAGTA LLVKETMDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDFDMFNGSPVRYNWELIGKKEIYIPYNDYKLH SDKLKYNQILKAGHINPEYVRWEKHRVWEVKATLKPGMRHIYKTRVMYLDEDSWQVSVADLYDNRDELYRVAVAHGLNYY EVPTQWNTLEVFHDLQSRRYLVMGLDNQSGMYNFDAKLSEANFTPDALRREGIR >Mature_454_residues MKKLTILASAVIMALAAPVVMAKVSEADAAKLGNELTPLGAEKAGNADGSIPAWDGGITQPVAGYTKGMHHPDPFPEDKI EFTITNANKAEYKDFLTPGQLRLFELYPDTYKMNVYKTRRSASVPQFVYDATKANATRAELVAQGNGLSGASIGIPFPIP TNGLEAIWNHILRFRGVDVETTRSQAAPTADGNFTLVEMAEELRFEYSRPEITLEQLKANNTLFYFKQVVTQPARLAGTA LLVKETMDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDFDMFNGSPVRYNWELIGKKEIYIPYNDYKLH SDKLKYNQILKAGHINPEYVRWEKHRVWEVKATLKPGMRHIYKTRVMYLDEDSWQVSVADLYDNRDELYRVAVAHGLNYY EVPTQWNTLEVFHDLQSRRYLVMGLDNQSGMYNFDAKLSEANFTPDALRREGIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010752 [H]
Pfam domain/function: PF07044 DUF1329 [H]
EC number: NA
Molecular weight: Translated: 51410; Mature: 51410
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLTILASAVIMALAAPVVMAKVSEADAAKLGNELTPLGAEKAGNADGSIPAWDGGITQ CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PVAGYTKGMHHPDPFPEDKIEFTITNANKAEYKDFLTPGQLRLFELYPDTYKMNVYKTRR CHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCEEEEEECCCCEEEEEEEECC SASVPQFVYDATKANATRAELVAQGNGLSGASIGIPFPIPTNGLEAIWNHILRFRGVDVE CCCCCHHHHHHHCCCCCHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC TTRSQAAPTADGNFTLVEMAEELRFEYSRPEITLEQLKANNTLFYFKQVVTQPARLAGTA CCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCEEHHHHCCCCEEEEHHHHHCCCHHHHHHH LLVKETMDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDFDMFNGSPVRY HHHHHHHCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE NWELIGKKEIYIPYNDYKLHSDKLKYNQILKAGHINPEYVRWEKHRVWEVKATLKPGMRH EEEEECCEEEEEECCCCEECCCHHHHHHHHHHCCCCHHHEEEECCEEEEEEEHHHHHHHH IYKTRVMYLDEDSWQVSVADLYDNRDELYRVAVAHGLNYYEVPTQWNTLEVFHDLQSRRY HHHHEEEEEECCCCEEEEHHHHCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCEE LVMGLDNQSGMYNFDAKLSEANFTPDALRREGIR EEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure MKKLTILASAVIMALAAPVVMAKVSEADAAKLGNELTPLGAEKAGNADGSIPAWDGGITQ CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PVAGYTKGMHHPDPFPEDKIEFTITNANKAEYKDFLTPGQLRLFELYPDTYKMNVYKTRR CHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCEEEEEECCCCEEEEEEEECC SASVPQFVYDATKANATRAELVAQGNGLSGASIGIPFPIPTNGLEAIWNHILRFRGVDVE CCCCCHHHHHHHCCCCCHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC TTRSQAAPTADGNFTLVEMAEELRFEYSRPEITLEQLKANNTLFYFKQVVTQPARLAGTA CCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCEEHHHHCCCCEEEEHHHHHCCCHHHHHHH LLVKETMDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDFDMFNGSPVRY HHHHHHHCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE NWELIGKKEIYIPYNDYKLHSDKLKYNQILKAGHINPEYVRWEKHRVWEVKATLKPGMRH EEEEECCEEEEEECCCCEECCCHHHHHHHHHHCCCCHHHEEEECCEEEEEEEHHHHHHHH IYKTRVMYLDEDSWQVSVADLYDNRDELYRVAVAHGLNYYEVPTQWNTLEVFHDLQSRRY HHHHEEEEEECCCCEEEEHHHHCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCEE LVMGLDNQSGMYNFDAKLSEANFTPDALRREGIR EEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]