| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598626
Identifier: 120598626
GI number: 120598626
Start: 2082951
End: 2084993
Strand: Direct
Name: 120598626
Synonym: Sputw3181_1810
Alternate gene names: NA
Gene position: 2082951-2084993 (Clockwise)
Preceding gene: 120598625
Following gene: 120598627
Centisome position: 44.24
GC content: 43.42
Gene sequence:
>2043_bases ATGAAAATGGTTAAAAATAGCTTTAACAAGTCGGCGCTTGCTTTGGGGGTGGCGTCGGCATTGAGTTTATTAACAGTGGC AAGTGTTAATGCAGTCTCATTTGATTGGGGTGAGGTTAAGGGAACATTTGACTCAACTTGGACTGCTGGCGCGAGTTGGC GTGTTGGAGACCGTGATTGGTCTGGTCAAATTGGTAAAGTGAATCAGCCTCAATTTGATTGGTCTAACTACAGCGCATTT GGGAATACTAAGTATACCTCTACAGAGATCTGGGCTCAGCCAGGCTCTTATTCAAGTAACAACGATTTAAGTAATTTACT TTATTCTCAGGGTGATACTACTTCTGAGATCTTCAAAGGCTTACATGAGTTATCACTTAAGTATAAAAACTATGGCCTAT TTGCCCGCGGTATGTATTTTTACGATCGTAAATTAAACGACGGTAATTATGACTACAACGACCCGATAACAGGTAAAGCA TTTGATCCTTGTGATGATAACCGAGCATCTGAAGTTCAATGTAAGGATATTCGTCTACTTGATGCTTTTGTTTACGGTAA TTTCGATTTAAACGATGGTGCAAACCCTTTATCCATTCGTTTGGGTAACCAAGTGGTTTCATGGGGGGAAAGTACGTTAA TTGCCCATGGGATCAGTGAAATTAACGCTGTTGATTTAAATATCCTTAACGCACCAGGCGCAGAGTTGAAAGAAGCTTTT AGACCTCAAGGCATGGTGTGGGCATCCCTTGGGATCACTGATTCGTTAACAGTTGAAGCTTTCTATCAATACGATTGGCA ACCCATTTGGGTTCCAACGCCAGGCTCCATTTTTGCGACCAATGATTTTGCGGGTTTTGGTGGTTATGCCCAAAATGCAC AGCTTGGCTTTAACGCGAACCCAGATATTAATCTAGACTTCGTGATGCAAGAGTATGAACTCTTAGCAGGAATGATTGCC AGTGGTCAGACTATCCCAACAGCACAATTGGTGTCTATGGGATTAGCTTACCCAACCAAAGTGACCTTAGTGCAGGATGA ACAAGAGCCTAGCAACGGTGGGCAATACGGTATTAAGCTGGGTTATTATGCACCTTCACTCGGCGAGACCGAATTTGGGT TCTATTTTATGAACTACCATAGCCGTAGACCATTGATCAGTGGTACAGCGGCTGATTTCAGTACAGGGGCTATCATAGCT GATCTGGCAACGATAGGCCAAAACTCAGGCAATATTAATCGCGAACTGTTACTGAGTTTGAAGAGCTTTTCCAAGGCTCA AATTGTCTACCCAGAAGATATTAAGCTGTATGGCTTTAGCTTTAACACCTTGATTGGTGATACTTCTGTCGCTGCGGAAA TCGCCCACCGTCAAGATGAGCCGTTGCAGATTGATGATGTGGAATTGTTGTTTGCGGGTATGCCGCAGCAGTTAGCCAAT GCTGGAATACGGCCTGATCTTGATGGTATTTCCCAGATAAAGGATGTTAAACCAGGAGAAACTGTTGATGGGTTTATTCG CTTGGATACGACCCAAGCGCAAATGACCTTAACACACTTATTTGGCCCAACATTAGGTTTAGATAACTTAACTATGTTGG CCGAAGTCGGTGGTGTGTGGATCCATGATATGCCTGGTTTTGATGAACTGCGTCTCAATGGACCTGGCACTTCGCGCTCT GGTGGTAATCCAGATATGCCTGGAATTATTCAAGCACTGCACAATGGTCCAGAAACCAACCCATTCCCAACCGATTTTGC TTGGGGATATCGCATTGTTGCTAAAGCTGAATTTAATAACCTATTTGCGGGTGTGAATATGTCTCCAAGGGTGATTTTCT CCCATGACGTCGACGGTATCACACCAGATCCTATGTTCCTTTTTACGGAAGGACGTAAATCAATTGCACTAGGTCTTAAT TTTGACTACCAAAACCGCTGGGGTGCAGATCTGTCCTATAACAACTTCTTTGGCGGTGTGGGTACGACGAATGCGATGGC AGATCGTGATTATGTTTCATTCAATATCAAGTATTCGATCTAA
Upstream 100 bases:
>100_bases AAGGGGATTAATTGCTGTAACAATGATGTTACCTGTGAGCTAACAAGATGTTGGTTGTAATTCCTAAAACAAAGAATCCA GCAGGGTACGGAGAGCTAAA
Downstream 100 bases:
>100_bases AAGGATTAAAACAATGAAGAAACTGACGATATTGGCGAGTGCAGTCATAATGGCACTTGCAGCGCCTGTTGTAATGGCGA AAGTCTCAGAGGCTGATGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 680; Mature: 680
Protein sequence:
>680_residues MKMVKNSFNKSALALGVASALSLLTVASVNAVSFDWGEVKGTFDSTWTAGASWRVGDRDWSGQIGKVNQPQFDWSNYSAF GNTKYTSTEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKGLHELSLKYKNYGLFARGMYFYDRKLNDGNYDYNDPITGKA FDPCDDNRASEVQCKDIRLLDAFVYGNFDLNDGANPLSIRLGNQVVSWGESTLIAHGISEINAVDLNILNAPGAELKEAF RPQGMVWASLGITDSLTVEAFYQYDWQPIWVPTPGSIFATNDFAGFGGYAQNAQLGFNANPDINLDFVMQEYELLAGMIA SGQTIPTAQLVSMGLAYPTKVTLVQDEQEPSNGGQYGIKLGYYAPSLGETEFGFYFMNYHSRRPLISGTAADFSTGAIIA DLATIGQNSGNINRELLLSLKSFSKAQIVYPEDIKLYGFSFNTLIGDTSVAAEIAHRQDEPLQIDDVELLFAGMPQQLAN AGIRPDLDGISQIKDVKPGETVDGFIRLDTTQAQMTLTHLFGPTLGLDNLTMLAEVGGVWIHDMPGFDELRLNGPGTSRS GGNPDMPGIIQALHNGPETNPFPTDFAWGYRIVAKAEFNNLFAGVNMSPRVIFSHDVDGITPDPMFLFTEGRKSIALGLN FDYQNRWGADLSYNNFFGGVGTTNAMADRDYVSFNIKYSI
Sequences:
>Translated_680_residues MKMVKNSFNKSALALGVASALSLLTVASVNAVSFDWGEVKGTFDSTWTAGASWRVGDRDWSGQIGKVNQPQFDWSNYSAF GNTKYTSTEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKGLHELSLKYKNYGLFARGMYFYDRKLNDGNYDYNDPITGKA FDPCDDNRASEVQCKDIRLLDAFVYGNFDLNDGANPLSIRLGNQVVSWGESTLIAHGISEINAVDLNILNAPGAELKEAF RPQGMVWASLGITDSLTVEAFYQYDWQPIWVPTPGSIFATNDFAGFGGYAQNAQLGFNANPDINLDFVMQEYELLAGMIA SGQTIPTAQLVSMGLAYPTKVTLVQDEQEPSNGGQYGIKLGYYAPSLGETEFGFYFMNYHSRRPLISGTAADFSTGAIIA DLATIGQNSGNINRELLLSLKSFSKAQIVYPEDIKLYGFSFNTLIGDTSVAAEIAHRQDEPLQIDDVELLFAGMPQQLAN AGIRPDLDGISQIKDVKPGETVDGFIRLDTTQAQMTLTHLFGPTLGLDNLTMLAEVGGVWIHDMPGFDELRLNGPGTSRS GGNPDMPGIIQALHNGPETNPFPTDFAWGYRIVAKAEFNNLFAGVNMSPRVIFSHDVDGITPDPMFLFTEGRKSIALGLN FDYQNRWGADLSYNNFFGGVGTTNAMADRDYVSFNIKYSI >Mature_680_residues MKMVKNSFNKSALALGVASALSLLTVASVNAVSFDWGEVKGTFDSTWTAGASWRVGDRDWSGQIGKVNQPQFDWSNYSAF GNTKYTSTEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKGLHELSLKYKNYGLFARGMYFYDRKLNDGNYDYNDPITGKA FDPCDDNRASEVQCKDIRLLDAFVYGNFDLNDGANPLSIRLGNQVVSWGESTLIAHGISEINAVDLNILNAPGAELKEAF RPQGMVWASLGITDSLTVEAFYQYDWQPIWVPTPGSIFATNDFAGFGGYAQNAQLGFNANPDINLDFVMQEYELLAGMIA SGQTIPTAQLVSMGLAYPTKVTLVQDEQEPSNGGQYGIKLGYYAPSLGETEFGFYFMNYHSRRPLISGTAADFSTGAIIA DLATIGQNSGNINRELLLSLKSFSKAQIVYPEDIKLYGFSFNTLIGDTSVAAEIAHRQDEPLQIDDVELLFAGMPQQLAN AGIRPDLDGISQIKDVKPGETVDGFIRLDTTQAQMTLTHLFGPTLGLDNLTMLAEVGGVWIHDMPGFDELRLNGPGTSRS GGNPDMPGIIQALHNGPETNPFPTDFAWGYRIVAKAEFNNLFAGVNMSPRVIFSHDVDGITPDPMFLFTEGRKSIALGLN FDYQNRWGADLSYNNFFGGVGTTNAMADRDYVSFNIKYSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74537; Mature: 74537
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMVKNSFNKSALALGVASALSLLTVASVNAVSFDWGEVKGTFDSTWTAGASWRVGDRDW CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCCCCCCCCEEECCCCCC SGQIGKVNQPQFDWSNYSAFGNTKYTSTEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKG CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHH LHELSLKYKNYGLFARGMYFYDRKLNDGNYDYNDPITGKAFDPCDDNRASEVQCKDIRLL HHHHHEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEE DAFVYGNFDLNDGANPLSIRLGNQVVSWGESTLIAHGISEINAVDLNILNAPGAELKEAF EEEEEECEECCCCCCEEEEEECCCEECCCCCEEEECCCCCCCEEEEEEECCCCHHHHHHH RPQGMVWASLGITDSLTVEAFYQYDWQPIWVPTPGSIFATNDFAGFGGYAQNAQLGFNAN CCCCEEEEECCCCCCEEEEEEEECCCEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCC PDINLDFVMQEYELLAGMIASGQTIPTAQLVSMGLAYPTKVTLVQDEQEPSNGGQYGIKL CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEE GYYAPSLGETEFGFYFMNYHSRRPLISGTAADFSTGAIIADLATIGQNSGNINRELLLSL EEECCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH KSFSKAQIVYPEDIKLYGFSFNTLIGDTSVAAEIAHRQDEPLQIDDVELLFAGMPQQLAN HCCCCEEEECCCCEEEEEEEEHHEECCHHHHHHHHHCCCCCCEECCHHEEECCCCHHHHC AGIRPDLDGISQIKDVKPGETVDGFIRLDTTQAQMTLTHLFGPTLGLDNLTMLAEVGGVW CCCCCCCHHHHHHHCCCCCCCCCCEEEEECCHHHEEEHHHHCCCCCCCCHHHHHHHCCEE IHDMPGFDELRLNGPGTSRSGGNPDMPGIIQALHNGPETNPFPTDFAWGYRIVAKAEFNN EECCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCC LFAGVNMSPRVIFSHDVDGITPDPMFLFTEGRKSIALGLNFDYQNRWGADLSYNNFFGGV EEECCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCC GTTNAMADRDYVSFNIKYSI CCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MKMVKNSFNKSALALGVASALSLLTVASVNAVSFDWGEVKGTFDSTWTAGASWRVGDRDW CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCCCCCCCCEEECCCCCC SGQIGKVNQPQFDWSNYSAFGNTKYTSTEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKG CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHH LHELSLKYKNYGLFARGMYFYDRKLNDGNYDYNDPITGKAFDPCDDNRASEVQCKDIRLL HHHHHEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEE DAFVYGNFDLNDGANPLSIRLGNQVVSWGESTLIAHGISEINAVDLNILNAPGAELKEAF EEEEEECEECCCCCCEEEEEECCCEECCCCCEEEECCCCCCCEEEEEEECCCCHHHHHHH RPQGMVWASLGITDSLTVEAFYQYDWQPIWVPTPGSIFATNDFAGFGGYAQNAQLGFNAN CCCCEEEEECCCCCCEEEEEEEECCCEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCC PDINLDFVMQEYELLAGMIASGQTIPTAQLVSMGLAYPTKVTLVQDEQEPSNGGQYGIKL CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEE GYYAPSLGETEFGFYFMNYHSRRPLISGTAADFSTGAIIADLATIGQNSGNINRELLLSL EEECCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH KSFSKAQIVYPEDIKLYGFSFNTLIGDTSVAAEIAHRQDEPLQIDDVELLFAGMPQQLAN HCCCCEEEECCCCEEEEEEEEHHEECCHHHHHHHHHCCCCCCEECCHHEEECCCCHHHHC AGIRPDLDGISQIKDVKPGETVDGFIRLDTTQAQMTLTHLFGPTLGLDNLTMLAEVGGVW CCCCCCCHHHHHHHCCCCCCCCCCEEEEECCHHHEEEHHHHCCCCCCCCHHHHHHHCCEE IHDMPGFDELRLNGPGTSRSGGNPDMPGIIQALHNGPETNPFPTDFAWGYRIVAKAEFNN EECCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCC LFAGVNMSPRVIFSHDVDGITPDPMFLFTEGRKSIALGLNFDYQNRWGADLSYNNFFGGV EEECCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCC GTTNAMADRDYVSFNIKYSI CCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA