| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598124
Identifier: 120598124
GI number: 120598124
Start: 1485119
End: 1486369
Strand: Direct
Name: 120598124
Synonym: Sputw3181_1301
Alternate gene names: NA
Gene position: 1485119-1486369 (Clockwise)
Preceding gene: 120598123
Following gene: 120598125
Centisome position: 31.54
GC content: 41.33
Gene sequence:
>1251_bases ATGAAAAATATCGCTATTGTTGGCACTGGTATCTCAGGTTTAACCTGTGGCCATTTATTGAGTGAGTCACATAAAGTGAC AGTATTTGAAGCCAATGACTATATTGGTGGTCACACCGCCACTGTCGATATTCATCATCAGGGACAAAATTACGCTATTG ATACTGGTTTTATCGTATTTAACGACAGAACTTATCCTCGTTTTGAGCGTTTATTGGCTCGTCTTAAGGTAAAGATATTA CCGACAGAAATGAGTTTTAGTGTGCACAATACGCTGACAGGACTTGAGTATAATGGTCACCACTTTGGTAGTTTATTTGC TCAAAAGCGGAATATTTTTAACCCTCGTTTTTGGACTTTTTTAAGAGAAATTTTACGCTTTAATAAAAGTTGCAAAGCGA TTTATCAGCAAGATAAATATCCCGAGGGAAATTTGGGGGATTTTTTAGAGCGAGAACATTTTTCGCCTTTTTTTGCTGAG CATTATATTTTACCTATGGGAGCGGCGATTTGGTCTTCAAGTATTGAAGATATGCGAGCATTTTCACTGAGGTTCTTTAT TCGCTTCTTTGAACATCACGGATTATTAAATGTCAGTGATAGACCTCAATGGTATGTGCTTGAAGGCGGTTCTCGTAGTT ATATTCCTGATTTAATTGCCCCGTTTAAAGAGAGTATTCACTTAAACTCCCCTGTTAGTGCGATTGAACGGCAACACGAT GGAGTGAGATTGCTCGTTAAAGGTGAGTGGCTTGAGTTTGATGAAGTTATTTTAGCCTGCCATAGTGATCAAGCACTTAG GATGCTTATGGATCCTACATCGACTGAGAAGGCCGTTCTCGGTGATTTGCAATATCAAGATAACGATGTTGTGCTACATA CAGACACACGCATTTTACCTCAACGTAAAGCTGCTTGGGCTAGCTGGAACTATCGCTTAGATGGTGATTTAAAGCGCCCC GCATCAGTCACTTACAATATGAACATTCTGCAACAGTTGCCTGCCAATGCACCGACTTTTTGTATCACGTTGAATCAGTC AGAATTGATTGATGAGGCTAAAGTATTGCGCCGTTTCACCTACGCTCACCCCGTATTTAATGAGGCCAGTCTCAAGGCAC AAGCTCGGCGTGAGGAGATTTCAGGCCACAATCATACCCATTTTGCTGGCGCTTATTGGCACAATGGTTTCCATGAAGAT GGCGTTCGTAGTGCCCTCGATGTGTGTGCACACTTCGGAGTAGAACTATGA
Upstream 100 bases:
>100_bases GGCGTTTTACTTATTTACTGAAACTATTGTCATTTTTACCTGCTTTTTTATGGCAAAAGATGATGGCTACCAATACCAAG CCACTTAAGGATCCGAGTCT
Downstream 100 bases:
>100_bases CGACGCTTAGCAGTGGTATTTATTACGGCACTGTATTCCACAGTCGTTTTACACCCATCAAGCATAATTTCAGCTATGAA ATGGCATTGCTTGCGATTGA
Product: amine oxidase
Products: NA
Alternate protein names: FAD Dependent Oxidoreductase; Amine Oxidase Flavin-Containing; Dehydrogenase; Amine Oxidoreductase; Flavin Containing Amine Oxidoreductase; Flavin-Containing Amine Oxidase; Amino-Oxidase; Oxidoreductase; Amine Oxidase Flavin-Containing Superfamily; FAD-Dependent Oxidoreductase; Amino Oxidase; Flavin Containing Amine Oxidoreductase Protein; Amine Oxidase Flavin-Containing Protein; Amine Oxidase Protein; Amine OxidaseFAD Dependent Oxidoreductase; Amine-Oxidase; Fad Dependent Oxidoreductase; Flavin Containing Amine Oxidoreductas; Lipoprotein
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MKNIAIVGTGISGLTCGHLLSESHKVTVFEANDYIGGHTATVDIHHQGQNYAIDTGFIVFNDRTYPRFERLLARLKVKIL PTEMSFSVHNTLTGLEYNGHHFGSLFAQKRNIFNPRFWTFLREILRFNKSCKAIYQQDKYPEGNLGDFLEREHFSPFFAE HYILPMGAAIWSSSIEDMRAFSLRFFIRFFEHHGLLNVSDRPQWYVLEGGSRSYIPDLIAPFKESIHLNSPVSAIERQHD GVRLLVKGEWLEFDEVILACHSDQALRMLMDPTSTEKAVLGDLQYQDNDVVLHTDTRILPQRKAAWASWNYRLDGDLKRP ASVTYNMNILQQLPANAPTFCITLNQSELIDEAKVLRRFTYAHPVFNEASLKAQARREEISGHNHTHFAGAYWHNGFHED GVRSALDVCAHFGVEL
Sequences:
>Translated_416_residues MKNIAIVGTGISGLTCGHLLSESHKVTVFEANDYIGGHTATVDIHHQGQNYAIDTGFIVFNDRTYPRFERLLARLKVKIL PTEMSFSVHNTLTGLEYNGHHFGSLFAQKRNIFNPRFWTFLREILRFNKSCKAIYQQDKYPEGNLGDFLEREHFSPFFAE HYILPMGAAIWSSSIEDMRAFSLRFFIRFFEHHGLLNVSDRPQWYVLEGGSRSYIPDLIAPFKESIHLNSPVSAIERQHD GVRLLVKGEWLEFDEVILACHSDQALRMLMDPTSTEKAVLGDLQYQDNDVVLHTDTRILPQRKAAWASWNYRLDGDLKRP ASVTYNMNILQQLPANAPTFCITLNQSELIDEAKVLRRFTYAHPVFNEASLKAQARREEISGHNHTHFAGAYWHNGFHED GVRSALDVCAHFGVEL >Mature_416_residues MKNIAIVGTGISGLTCGHLLSESHKVTVFEANDYIGGHTATVDIHHQGQNYAIDTGFIVFNDRTYPRFERLLARLKVKIL PTEMSFSVHNTLTGLEYNGHHFGSLFAQKRNIFNPRFWTFLREILRFNKSCKAIYQQDKYPEGNLGDFLEREHFSPFFAE HYILPMGAAIWSSSIEDMRAFSLRFFIRFFEHHGLLNVSDRPQWYVLEGGSRSYIPDLIAPFKESIHLNSPVSAIERQHD GVRLLVKGEWLEFDEVILACHSDQALRMLMDPTSTEKAVLGDLQYQDNDVVLHTDTRILPQRKAAWASWNYRLDGDLKRP ASVTYNMNILQQLPANAPTFCITLNQSELIDEAKVLRRFTYAHPVFNEASLKAQARREEISGHNHTHFAGAYWHNGFHED GVRSALDVCAHFGVEL
Specific function: Unknown
COG id: COG2907
COG function: function code R; Predicted NAD/FAD-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47683; Mature: 47683
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIAIVGTGISGLTCGHLLSESHKVTVFEANDYIGGHTATVDIHHQGQNYAIDTGFIVF CCCEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEEE NDRTYPRFERLLARLKVKILPTEMSFSVHNTLTGLEYNGHHFGSLFAQKRNIFNPRFWTF CCCCCHHHHHHHHHHEEEEEECCCCEEHHHHEECCEECCCHHHHHHHHHHCCCCCHHHHH LREILRFNKSCKAIYQQDKYPEGNLGDFLEREHFSPFFAEHYILPMGAAIWSSSIEDMRA HHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCHHHHHH FSLRFFIRFFEHHGLLNVSDRPQWYVLEGGSRSYIPDLIAPFKESIHLNSPVSAIERQHD HHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHCEECCCCHHHHHHCCC GVRLLVKGEWLEFDEVILACHSDQALRMLMDPTSTEKAVLGDLQYQDNDVVLHTDTRILP CEEEEEECCCCCCCCEEEEECCCHHHHHHCCCCCCCHHHEECCEECCCCEEEEECCEECC QRKAAWASWNYRLDGDLKRPASVTYNMNILQQLPANAPTFCITLNQSELIDEAKVLRRFT CCHHHHCCCCEEECCCCCCCCEEEECHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHH YAHPVFNEASLKAQARREEISGHNHTHFAGAYWHNGFHEDGVRSALDVCAHFGVEL HHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKNIAIVGTGISGLTCGHLLSESHKVTVFEANDYIGGHTATVDIHHQGQNYAIDTGFIVF CCCEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEEE NDRTYPRFERLLARLKVKILPTEMSFSVHNTLTGLEYNGHHFGSLFAQKRNIFNPRFWTF CCCCCHHHHHHHHHHEEEEEECCCCEEHHHHEECCEECCCHHHHHHHHHHCCCCCHHHHH LREILRFNKSCKAIYQQDKYPEGNLGDFLEREHFSPFFAEHYILPMGAAIWSSSIEDMRA HHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCHHHHHH FSLRFFIRFFEHHGLLNVSDRPQWYVLEGGSRSYIPDLIAPFKESIHLNSPVSAIERQHD HHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHCEECCCCHHHHHHCCC GVRLLVKGEWLEFDEVILACHSDQALRMLMDPTSTEKAVLGDLQYQDNDVVLHTDTRILP CEEEEEECCCCCCCCEEEEECCCHHHHHHCCCCCCCHHHEECCEECCCCEEEEECCEECC QRKAAWASWNYRLDGDLKRPASVTYNMNILQQLPANAPTFCITLNQSELIDEAKVLRRFT CCHHHHCCCCEEECCCCCCCCEEEECHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHH YAHPVFNEASLKAQARREEISGHNHTHFAGAYWHNGFHEDGVRSALDVCAHFGVEL HHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA