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The map label for this gene is ydfG [C]

Identifier: 120598123

GI number: 120598123

Start: 1484295

End: 1485122

Strand: Direct

Name: ydfG [C]

Synonym: Sputw3181_1300

Alternate gene names: 120598123

Gene position: 1484295-1485122 (Clockwise)

Preceding gene: 120598122

Following gene: 120598124

Centisome position: 31.52

GC content: 43.84

Gene sequence:

>828_bases
ATGGACAGTGTTAATTATCGTCCTGTCGATCAATCTAGCGTTGTCAAACTGGCACAGCACAAAACTGTGCTTATTACTGG
GGCAACTTCAGGGATTGGATTGCAACTAGCGCAGGATTACTTACAGCAGGGTTGGCATGTTATTGCCTGTGGTCGCGATC
GGCAGCGTCTGGATGCATTGGCATTAGTTGAGCTTTTAGGCGCCTCGATTATCGTGTTTGATATATCGCAGCGCGAGCAA
GTTCAGCAAGCCGCGAAAGACTTAAGCCAGTTATTAATCCATAAACATTGCCAACTCGATTTAGTGATTTTAAATGCGGG
GAGCTGTGAATATATCGATGATGCCAAAGCGTTTGATGATGCATTATTCGAGCGAGTTATTCATACCAATCTTATTTCGA
TGGGTTATTGCCTTGGTGCATTTTTACCTTTGATGCCAAAAGGTTCACATATTGGATTAATGAGCTCGAGTGCGATTTAC
TTACCTTTTCCCCGTGCTGAAGCCTATGGCGCCTCTAAAGCTGGCGTACAGTATTTAGCCTCAAGTTTAGCGATAGATTT
GACGCAATTTGGCATTGGGGTGAGTTTGATTTGCCCAGGTTTTGTGGCAACCCCATTAACGGCTAAAAATAATTTCCCCA
TGCCGATGCAAGTGACTGTTGAAGCCGCTTCTAGGGCTATACGCCGCGGATTAAAACGTGGTCAGCGTGAGGTTCATTTT
CCAAGGCGTTTTACTTATTTACTGAAACTATTGTCATTTTTACCTGCTTTTTTATGGCAAAAGATGATGGCTACCAATAC
CAAGCCACTTAAGGATCCGAGTCTATGA

Upstream 100 bases:

>100_bases
TTTTCCACCGAGATTACTTCGACCTCGGGCAAATGCTATACGAGCACTTGCCTTGCATGGGGGGGCTAATTCGCTTACTT
AAAGATAGGGCGGCAAAGTA

Downstream 100 bases:

>100_bases
AAAATATCGCTATTGTTGGCACTGGTATCTCAGGTTTAACCTGTGGCCATTTATTGAGTGAGTCACATAAAGTGACAGTA
TTTGAAGCCAATGACTATAT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MDSVNYRPVDQSSVVKLAQHKTVLITGATSGIGLQLAQDYLQQGWHVIACGRDRQRLDALALVELLGASIIVFDISQREQ
VQQAAKDLSQLLIHKHCQLDLVILNAGSCEYIDDAKAFDDALFERVIHTNLISMGYCLGAFLPLMPKGSHIGLMSSSAIY
LPFPRAEAYGASKAGVQYLASSLAIDLTQFGIGVSLICPGFVATPLTAKNNFPMPMQVTVEAASRAIRRGLKRGQREVHF
PRRFTYLLKLLSFLPAFLWQKMMATNTKPLKDPSL

Sequences:

>Translated_275_residues
MDSVNYRPVDQSSVVKLAQHKTVLITGATSGIGLQLAQDYLQQGWHVIACGRDRQRLDALALVELLGASIIVFDISQREQ
VQQAAKDLSQLLIHKHCQLDLVILNAGSCEYIDDAKAFDDALFERVIHTNLISMGYCLGAFLPLMPKGSHIGLMSSSAIY
LPFPRAEAYGASKAGVQYLASSLAIDLTQFGIGVSLICPGFVATPLTAKNNFPMPMQVTVEAASRAIRRGLKRGQREVHF
PRRFTYLLKLLSFLPAFLWQKMMATNTKPLKDPSL
>Mature_275_residues
MDSVNYRPVDQSSVVKLAQHKTVLITGATSGIGLQLAQDYLQQGWHVIACGRDRQRLDALALVELLGASIIVFDISQREQ
VQQAAKDLSQLLIHKHCQLDLVILNAGSCEYIDDAKAFDDALFERVIHTNLISMGYCLGAFLPLMPKGSHIGLMSSSAIY
LPFPRAEAYGASKAGVQYLASSLAIDLTQFGIGVSLICPGFVATPLTAKNNFPMPMQVTVEAASRAIRRGLKRGQREVHF
PRRFTYLLKLLSFLPAFLWQKMMATNTKPLKDPSL

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=25.9067357512953, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI5031737, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI142976729, Length=252, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=31.1475409836066, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=31.9587628865979, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082100, Length=217, Percent_Identity=31.7972350230415, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789378, Length=197, Percent_Identity=25.8883248730964, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=262, Percent_Identity=26.7175572519084, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=29.0816326530612, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=31.2820512820513, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=29.0816326530612, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30276; Mature: 30276

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSVNYRPVDQSSVVKLAQHKTVLITGATSGIGLQLAQDYLQQGWHVIACGRDRQRLDAL
CCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHH
ALVELLGASIIVFDISQREQVQQAAKDLSQLLIHKHCQLDLVILNAGSCEYIDDAKAFDD
HHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHH
ALFERVIHTNLISMGYCLGAFLPLMPKGSHIGLMSSSAIYLPFPRAEAYGASKAGVQYLA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCHHHCCCHHHHHHHHH
SSLAIDLTQFGIGVSLICPGFVATPLTAKNNFPMPMQVTVEAASRAIRRGLKRGQREVHF
HHHHHHHHHHCCCHHHHCCCHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHCCC
PRRFTYLLKLLSFLPAFLWQKMMATNTKPLKDPSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDSVNYRPVDQSSVVKLAQHKTVLITGATSGIGLQLAQDYLQQGWHVIACGRDRQRLDAL
CCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHH
ALVELLGASIIVFDISQREQVQQAAKDLSQLLIHKHCQLDLVILNAGSCEYIDDAKAFDD
HHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHH
ALFERVIHTNLISMGYCLGAFLPLMPKGSHIGLMSSSAIYLPFPRAEAYGASKAGVQYLA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCHHHCCCHHHHHHHHH
SSLAIDLTQFGIGVSLICPGFVATPLTAKNNFPMPMQVTVEAASRAIRRGLKRGQREVHF
HHHHHHHHHHCCCHHHHCCCHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHCCC
PRRFTYLLKLLSFLPAFLWQKMMATNTKPLKDPSL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]