| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598122
Identifier: 120598122
GI number: 120598122
Start: 1483858
End: 1484295
Strand: Direct
Name: 120598122
Synonym: Sputw3181_1299
Alternate gene names: NA
Gene position: 1483858-1484295 (Clockwise)
Preceding gene: 120598121
Following gene: 120598123
Centisome position: 31.52
GC content: 38.58
Gene sequence:
>438_bases ATGACTGAAGTAAATCCAAATACACTTGTTGACGATTTTATCCAGCTATACCAAGCATTAAATAAAGACAATCTGCATTT GCTCGAGCGAGTTTACGATGACAAGATTATATTTGCCGATCCTATGCATCAGATTATCGGTTTACCTGCATTAACTCAGT ACTTTGCTAAGTTATATAAAAATATTCAGCATATTCAGTTTGATATTAAGGAAGTACAACAGAATAACTCTCAGGCCTCA CTATTTTGGCAAATGCAGTATTCCCACCCCAAGTTAAATAAGGGGGAAACTATTTTTGTCGATGGCATGAGCCAACTGAG ATTCAATGAGAAAATCTTTTTCCACCGAGATTACTTCGACCTCGGGCAAATGCTATACGAGCACTTGCCTTGCATGGGGG GGCTAATTCGCTTACTTAAAGATAGGGCGGCAAAGTAA
Upstream 100 bases:
>100_bases ATAGTGGATCACACCGAAGCAAGGGTTAGAGCATTAAGTGTGCTCGGCGTATTGAAAAAGGCTTCTGCCTTATAAATTTG GGTTCTGGAGTAATACAGCG
Downstream 100 bases:
>100_bases TGGACAGTGTTAATTATCGTCCTGTCGATCAATCTAGCGTTGTCAAACTGGCACAGCACAAAACTGTGCTTATTACTGGG GCAACTTCAGGGATTGGATT
Product: transcriptional regulator-like protein
Products: NA
Alternate protein names: Transcriptional Regulator-Related Protein; Ketosteroid Isomerase-Like Protein; Ketosteroid Isomerase-Related Protein Cystatin Fold
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MTEVNPNTLVDDFIQLYQALNKDNLHLLERVYDDKIIFADPMHQIIGLPALTQYFAKLYKNIQHIQFDIKEVQQNNSQAS LFWQMQYSHPKLNKGETIFVDGMSQLRFNEKIFFHRDYFDLGQMLYEHLPCMGGLIRLLKDRAAK
Sequences:
>Translated_145_residues MTEVNPNTLVDDFIQLYQALNKDNLHLLERVYDDKIIFADPMHQIIGLPALTQYFAKLYKNIQHIQFDIKEVQQNNSQAS LFWQMQYSHPKLNKGETIFVDGMSQLRFNEKIFFHRDYFDLGQMLYEHLPCMGGLIRLLKDRAAK >Mature_144_residues TEVNPNTLVDDFIQLYQALNKDNLHLLERVYDDKIIFADPMHQIIGLPALTQYFAKLYKNIQHIQFDIKEVQQNNSQASL FWQMQYSHPKLNKGETIFVDGMSQLRFNEKIFFHRDYFDLGQMLYEHLPCMGGLIRLLKDRAAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17183; Mature: 17052
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEVNPNTLVDDFIQLYQALNKDNLHLLERVYDDKIIFADPMHQIIGLPALTQYFAKLYK CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHH NIQHIQFDIKEVQQNNSQASLFWQMQYSHPKLNKGETIFVDGMSQLRFNEKIFFHRDYFD HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEECCHHHHHHCCEEEEECCHHH LGQMLYEHLPCMGGLIRLLKDRAAK HHHHHHHHCCHHHHHHHHHHHHCCC >Mature Secondary Structure TEVNPNTLVDDFIQLYQALNKDNLHLLERVYDDKIIFADPMHQIIGLPALTQYFAKLYK CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHH NIQHIQFDIKEVQQNNSQASLFWQMQYSHPKLNKGETIFVDGMSQLRFNEKIFFHRDYFD HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEECCHHHHHHCCEEEEECCHHH LGQMLYEHLPCMGGLIRLLKDRAAK HHHHHHHHCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA