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The map label for this gene is yfiA [C]

Identifier: 120598110

GI number: 120598110

Start: 1469892

End: 1470248

Strand: Direct

Name: yfiA [C]

Synonym: Sputw3181_1287

Alternate gene names: 120598110

Gene position: 1469892-1470248 (Clockwise)

Preceding gene: 120598109

Following gene: 120598112

Centisome position: 31.22

GC content: 41.74

Gene sequence:

>357_bases
ATGAAAATAAATCTTTCTGGTCACCATGTCGATGTTACTGATTCTGTTAAAGAACATGTCAACGAAAAGTTTTCAAAAAT
CGCCACTCATTTCCCTAGTTTGATCGCGCTCGATATCATTATTGCGAAAGAACATGGCGAGTTTCAGGTTGAAATTCGAA
CAAATTATGAAGGTAGTCGCATTTCTGCTTCGGGTACCGATGAGGTGATGTATCCCGCAATTAAAGCGGCTGCCAAGAAG
TTAGATGCAGCACTTAAACACCGTAAAGGTCAGCTTAAAGCCGATTTACATGAAACGCCTAGCTGCACAACGCCTGCGAT
AGCCCATGAAATTATCCAAGAGATGGACTTACGTTAG

Upstream 100 bases:

>100_bases
GTCTAAATATTTGTCGATAGGGCTTGTGTTTTATCCTGCATGCCCCAAGCTCTAATAGTGAAGCGAAAATAAAAGTAATG
ACAATATAAAGGGACAACCT

Downstream 100 bases:

>100_bases
GCACTCACCTGCGATAATTTCTCTTGAATTAAATTAAAAGAGCTTGATGATAAAAAACGCAGCCAAAGGGCTGCGTTTTT
TTTCAGGCGAGAGACGGTTA

Product: sigma 54 modulation protein/ribosomal protein S30EA

Products: NA

Alternate protein names: ORF107 [H]

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPSLIALDIIIAKEHGEFQVEIRTNYEGSRISASGTDEVMYPAIKAAAKK
LDAALKHRKGQLKADLHETPSCTTPAIAHEIIQEMDLR

Sequences:

>Translated_118_residues
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPSLIALDIIIAKEHGEFQVEIRTNYEGSRISASGTDEVMYPAIKAAAKK
LDAALKHRKGQLKADLHETPSCTTPAIAHEIIQEMDLR
>Mature_118_residues
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPSLIALDIIIAKEHGEFQVEIRTNYEGSRISASGTDEVMYPAIKAAAKK
LDAALKHRKGQLKADLHETPSCTTPAIAHEIIQEMDLR

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13098; Mature: 13098

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPSLIALDIIIAKEHGEFQVEIRTNYEGSR
CEECCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCCCEEEEEEECCCCCE
ISASGTDEVMYPAIKAAAKKLDAALKHRKGQLKADLHETPSCTTPAIAHEIIQEMDLR
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPSLIALDIIIAKEHGEFQVEIRTNYEGSR
CEECCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCCCEEEEEEECCCCCE
ISASGTDEVMYPAIKAAAKKLDAALKHRKGQLKADLHETPSCTTPAIAHEIIQEMDLR
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2695747; 3481423 [H]