| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120597944
Identifier: 120597944
GI number: 120597944
Start: 1265250
End: 1265513
Strand: Direct
Name: 120597944
Synonym: Sputw3181_1115
Alternate gene names: NA
Gene position: 1265250-1265513 (Clockwise)
Preceding gene: 120597941
Following gene: 120597945
Centisome position: 26.87
GC content: 46.97
Gene sequence:
>264_bases GTGGAATCAGTGGCAGCTTTCGCGTGGAATGGGTGGCAGGCTTCGTCTGGAATCAGTGGCAACCTTGGTCTGGAATACGC AGTTATGGGCCTTAATTCTAGACAGTGGCCAGAAGCTGCGATGATTATGGTGCTCTTTACTATTGCTGAACTCATTGAAG CAAAATCACTCGATAGAGCTCGAAATGCAATCGGATCTCTAATGAATATTGAACGACAATTAACTTGTCCGGTCGGCGAC AACTATGTTGGCCGGTTGATCTGA
Upstream 100 bases:
>100_bases TGGCCCTCTCCGGATGAAAAGGAGCAGAGTACCGTTAGTTATCCCGCGCCGGACGTTTTGATGGGGGAATCAGGCAGCCT GCCAGGGTGGCAGCTTTGCC
Downstream 100 bases:
>100_bases TACCGTCCGTCACGGATTCCATTAGGAGATAACCGTGTCGGGCAAACCCATCACAGATCAACAAATCAGGTTATATGTGA ATGAACGTAAACAAGGTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 87; Mature: 87
Protein sequence:
>87_residues MESVAAFAWNGWQASSGISGNLGLEYAVMGLNSRQWPEAAMIMVLFTIAELIEAKSLDRARNAIGSLMNIERQLTCPVGD NYVGRLI
Sequences:
>Translated_87_residues MESVAAFAWNGWQASSGISGNLGLEYAVMGLNSRQWPEAAMIMVLFTIAELIEAKSLDRARNAIGSLMNIERQLTCPVGD NYVGRLI >Mature_87_residues MESVAAFAWNGWQASSGISGNLGLEYAVMGLNSRQWPEAAMIMVLFTIAELIEAKSLDRARNAIGSLMNIERQLTCPVGD NYVGRLI
Specific function: Unknown
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9490; Mature: 9490
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 5.7 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESVAAFAWNGWQASSGISGNLGLEYAVMGLNSRQWPEAAMIMVLFTIAELIEAKSLDRA CCCCCEEEECCEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RNAIGSLMNIERQLTCPVGDNYVGRLI HHHHHHHHCCHHEEECCCCCCCCCCCC >Mature Secondary Structure MESVAAFAWNGWQASSGISGNLGLEYAVMGLNSRQWPEAAMIMVLFTIAELIEAKSLDRA CCCCCEEEECCEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RNAIGSLMNIERQLTCPVGDNYVGRLI HHHHHHHHCCHHEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA