Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120597809

Identifier: 120597809

GI number: 120597809

Start: 1114141

End: 1114671

Strand: Direct

Name: 120597809

Synonym: Sputw3181_0979

Alternate gene names: NA

Gene position: 1114141-1114671 (Clockwise)

Preceding gene: 120597807

Following gene: 120597810

Centisome position: 23.66

GC content: 39.92

Gene sequence:

>531_bases
ATGTCTGTTGCTCTAAATACATTTAAGCGTGCAATTGGTGATGCGCGAGTATTAATCGAATGCTATGACAACCTTAATGT
TGGTCAAGGAAAGGCTGTTCCAGAGGCACTGAAAAGAGCCGCTTTGATCATGACTATGACGGCTTGGGAAACCTATGTAG
AAGATGTTGCTACAGAACTTTTCAACAACAAGTTTGGTGCACTAAAAGGGTGTCAAATTGGAAACTTTATGGAGCAGCAG
TTTTCTACTCGCTTGAAAATGTTTCATAACCCAGACTCTGCTAAAACGAAGCAAATTTTTGAAGAGTTTTTCGGGATTGA
TGTTACAGAGCATTGGAAATGGCCGAATTATATACCTAAACAAGCGAGAGAAACCCTTAATACTTGGCTCAAAAAGCGTG
GAGATGCGGTACACCGTGCTCAAGTTGAAATTGGTGTACCTCAAATCATAAAACGTGATGAAGTGGATAAATGTATTCGG
TTTATTACTGAATTGGTGACCGCTACAGATAAAGCATTAGGGTCAGATTAG

Upstream 100 bases:

>100_bases
CGCAGGGGATTGGCGTAACTCTTGGCATTAGTGTTTATTCATAATTTTTATTAAAAGTCAGATAGTTATTAATATAACTG
CTATTTAGCTAAGGAATTTA

Downstream 100 bases:

>100_bases
ATAGGTTTTAATAAATTTAAATTTACTTTGGATTATTTGATGCAAAAAATAAAAGTAGAAGGTCTTAAGTCCCTTAGGGA
TAGTGGTGACTTTGAATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATELFNNKFGALKGCQIGNFMEQQ
FSTRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPKQARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIR
FITELVTATDKALGSD

Sequences:

>Translated_176_residues
MSVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATELFNNKFGALKGCQIGNFMEQQ
FSTRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPKQARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIR
FITELVTATDKALGSD
>Mature_175_residues
SVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATELFNNKFGALKGCQIGNFMEQQF
STRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPKQARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIRF
ITELVTATDKALGSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20072; Mature: 19941

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATEL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FNNKFGALKGCQIGNFMEQQFSTRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPK
HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCHH
QARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIRFITELVTATDKALGSD
HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVALNTFKRAIGDARVLIECYDNLNVGQGKAVPEALKRAALIMTMTAWETYVEDVATEL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FNNKFGALKGCQIGNFMEQQFSTRLKMFHNPDSAKTKQIFEEFFGIDVTEHWKWPNYIPK
HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCHH
QARETLNTWLKKRGDAVHRAQVEIGVPQIIKRDEVDKCIRFITELVTATDKALGSD
HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA