| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597597
Identifier: 120597597
GI number: 120597597
Start: 850907
End: 852349
Strand: Direct
Name: 120597597
Synonym: Sputw3181_0766
Alternate gene names: NA
Gene position: 850907-852349 (Clockwise)
Preceding gene: 120597593
Following gene: 120597598
Centisome position: 18.07
GC content: 45.11
Gene sequence:
>1443_bases ATGCGAGCTAATCGAATCTCTTGGCCAATGGCTGTGCTAGCGGGCATGGTTGTTGTACAACTCGCAGGCTGTAGCGACCC TAAACCTACGGCTGTAATTGAAAGCAATAACGAATCATTAGTGCAGTTTGATAACGGTAAACTCATTCAATTGAAGGAAA AACCGAGTCCACAATACCGTCATATTCCCTGTGATTTACCCACGCTAGCCTCCGTTATAGCAAATAATATGGCTATTGCA GCTATCACCCAAAATGGCGATGTGATCACTTGGGGTAACAGTTTTAGCGGCGGCGATAGCCGTGAAGTGACAGATCAACT TAAAGATGTCATCCAAATTGTGCCAGTTAAGGACGGCTTTGCTGCGCTGCGTAAGAATGGCACTGTGGTGTACTGGGGTA ATGCGGGGAAATTGAGCCTCGACAAAGCACTACAAAACCGCATGACCAATATTACCAAGTTGTTCGCCAATCAAGAGGCC ATTGCTGCTCTAGATGCCAATGGCAAAGTACACACTTGGGGTTATGGCCCGTATGGTGGTAATAGCTTACATGTGCAGGA TCAGCTTATTGATGTAATTGATATCGTTGCTGCAGGGCGAAGTTTTACGGCACTAAAAAAAGACGGTAGTACTGTGATTT GGGGAAAAATTGAAAGCTCTACCAATATGAAAAAGCTGCTACCGCAACTTAAGGATGTCGTCAGCGTCGAGTACACTCAT GGTACCTTTGCTGCTTTGAAAAAGGATGGCACTGTCGTGACTTGGGGGCATAGTAGTGATGTTTATCCTATTCGCGGTGC GTTACAGGATGTGGCCAGTATTACGACAAATCGCTGTGCCTTTGCCATCTTAAGTCCTACGGGTGAGGCGCACTTTTGGG GTAATTCAACGAACTGCGGTATCGATTGGCTCAAACAAACGGGAATTAAAGGTGTGAGCAGTATTGTTAGCGTAGATACA GGTTTTTTGTTATTGCGTGACAATGCTGTACCGCAAATTATCGTCGACGATACTGACTACGCTTATCTGTATGGTTTTCA TTATGCCCAAGACATTCTCAATCAATATTGGCAGGAAGGGAGCCGTATTATCAGCGGGCAAGCATCATTTGTGTTTATTC GCCCAGATGGTAAGGTCGTGCCAGTAGGCTATCGAGCTAATCTCGAAAATGTCCAGAAGTTAATAGCAAGCATTCCGCGA TTAACTTGGTTAGGTGCAACAGATGATGGTTATGTCGGGCTCAGTGAAAAAGGAGAGTGGGTATCTTGGTCGATGAATAC CGATACGTTTGCTACATCTTCTGTAAAGGTTGCCGATTCACTCGTGATTAAGCCCCTCGATTTTTCGGCTCCAACACAAT GTGAAACGCAGGAGCAGCGTCAGGACATTTTGAGTAAAGAAAGACCAAATCCTGAAGTTAAAATGTGGTCGTTTAGCGAA TAG
Upstream 100 bases:
>100_bases CGCCTTTTCGCGATAAGCTGCTAGAATCGCGCGCATTTTATTGCTGTAAAAATTGAGTGCTGTAAAAATTGAGCGATACA ACAAATACAAGGAAATAGTA
Downstream 100 bases:
>100_bases GTGCTTGTTTGAGTTTAATGGACTTTCATCCGTATAGACGTCTATAATGCTCGCGCTTGATGTAGAGTAGATAGGTATAA AGAAATGAATGACGTTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 480; Mature: 480
Protein sequence:
>480_residues MRANRISWPMAVLAGMVVVQLAGCSDPKPTAVIESNNESLVQFDNGKLIQLKEKPSPQYRHIPCDLPTLASVIANNMAIA AITQNGDVITWGNSFSGGDSREVTDQLKDVIQIVPVKDGFAALRKNGTVVYWGNAGKLSLDKALQNRMTNITKLFANQEA IAALDANGKVHTWGYGPYGGNSLHVQDQLIDVIDIVAAGRSFTALKKDGSTVIWGKIESSTNMKKLLPQLKDVVSVEYTH GTFAALKKDGTVVTWGHSSDVYPIRGALQDVASITTNRCAFAILSPTGEAHFWGNSTNCGIDWLKQTGIKGVSSIVSVDT GFLLLRDNAVPQIIVDDTDYAYLYGFHYAQDILNQYWQEGSRIISGQASFVFIRPDGKVVPVGYRANLENVQKLIASIPR LTWLGATDDGYVGLSEKGEWVSWSMNTDTFATSSVKVADSLVIKPLDFSAPTQCETQEQRQDILSKERPNPEVKMWSFSE
Sequences:
>Translated_480_residues MRANRISWPMAVLAGMVVVQLAGCSDPKPTAVIESNNESLVQFDNGKLIQLKEKPSPQYRHIPCDLPTLASVIANNMAIA AITQNGDVITWGNSFSGGDSREVTDQLKDVIQIVPVKDGFAALRKNGTVVYWGNAGKLSLDKALQNRMTNITKLFANQEA IAALDANGKVHTWGYGPYGGNSLHVQDQLIDVIDIVAAGRSFTALKKDGSTVIWGKIESSTNMKKLLPQLKDVVSVEYTH GTFAALKKDGTVVTWGHSSDVYPIRGALQDVASITTNRCAFAILSPTGEAHFWGNSTNCGIDWLKQTGIKGVSSIVSVDT GFLLLRDNAVPQIIVDDTDYAYLYGFHYAQDILNQYWQEGSRIISGQASFVFIRPDGKVVPVGYRANLENVQKLIASIPR LTWLGATDDGYVGLSEKGEWVSWSMNTDTFATSSVKVADSLVIKPLDFSAPTQCETQEQRQDILSKERPNPEVKMWSFSE >Mature_480_residues MRANRISWPMAVLAGMVVVQLAGCSDPKPTAVIESNNESLVQFDNGKLIQLKEKPSPQYRHIPCDLPTLASVIANNMAIA AITQNGDVITWGNSFSGGDSREVTDQLKDVIQIVPVKDGFAALRKNGTVVYWGNAGKLSLDKALQNRMTNITKLFANQEA IAALDANGKVHTWGYGPYGGNSLHVQDQLIDVIDIVAAGRSFTALKKDGSTVIWGKIESSTNMKKLLPQLKDVVSVEYTH GTFAALKKDGTVVTWGHSSDVYPIRGALQDVASITTNRCAFAILSPTGEAHFWGNSTNCGIDWLKQTGIKGVSSIVSVDT GFLLLRDNAVPQIIVDDTDYAYLYGFHYAQDILNQYWQEGSRIISGQASFVFIRPDGKVVPVGYRANLENVQKLIASIPR LTWLGATDDGYVGLSEKGEWVSWSMNTDTFATSSVKVADSLVIKPLDFSAPTQCETQEQRQDILSKERPNPEVKMWSFSE
Specific function: Unknown
COG id: COG5184
COG function: function code DZ; Alpha-tubulin suppressor and related RCC1 domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52496; Mature: 52496
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRANRISWPMAVLAGMVVVQLAGCSDPKPTAVIESNNESLVQFDNGKLIQLKEKPSPQYR CCCCCCCCHHHHHHHHHHHHEECCCCCCCCEEEECCCCCEEEECCCCEEEEECCCCCCCE HIPCDLPTLASVIANNMAIAAITQNGDVITWGNSFSGGDSREVTDQLKDVIQIVPVKDGF ECCCCHHHHHHHHHCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHEEECCCCCH AALRKNGTVVYWGNAGKLSLDKALQNRMTNITKLFANQEAIAALDANGKVHTWGYGPYGG HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCC NSLHVQDQLIDVIDIVAAGRSFTALKKDGSTVIWGKIESSTNMKKLLPQLKDVVSVEYTH CEEEEHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHEEEECC GTFAALKKDGTVVTWGHSSDVYPIRGALQDVASITTNRCAFAILSPTGEAHFWGNSTNCG CEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCCC IDWLKQTGIKGVSSIVSVDTGFLLLRDNAVPQIIVDDTDYAYLYGFHYAQDILNQYWQEG HHHHHHCCCHHHHHHHHHCCCEEEEECCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHCC SRIISGQASFVFIRPDGKVVPVGYRANLENVQKLIASIPRLTWLGATDDGYVGLSEKGEW CEEEECCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCE VSWSMNTDTFATSSVKVADSLVIKPLDFSAPTQCETQEQRQDILSKERPNPEVKMWSFSE EEEECCCCCEECCCEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCC >Mature Secondary Structure MRANRISWPMAVLAGMVVVQLAGCSDPKPTAVIESNNESLVQFDNGKLIQLKEKPSPQYR CCCCCCCCHHHHHHHHHHHHEECCCCCCCCEEEECCCCCEEEECCCCEEEEECCCCCCCE HIPCDLPTLASVIANNMAIAAITQNGDVITWGNSFSGGDSREVTDQLKDVIQIVPVKDGF ECCCCHHHHHHHHHCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHEEECCCCCH AALRKNGTVVYWGNAGKLSLDKALQNRMTNITKLFANQEAIAALDANGKVHTWGYGPYGG HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCC NSLHVQDQLIDVIDIVAAGRSFTALKKDGSTVIWGKIESSTNMKKLLPQLKDVVSVEYTH CEEEEHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHEEEECC GTFAALKKDGTVVTWGHSSDVYPIRGALQDVASITTNRCAFAILSPTGEAHFWGNSTNCG CEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCCC IDWLKQTGIKGVSSIVSVDTGFLLLRDNAVPQIIVDDTDYAYLYGFHYAQDILNQYWQEG HHHHHHCCCHHHHHHHHHCCCEEEEECCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHCC SRIISGQASFVFIRPDGKVVPVGYRANLENVQKLIASIPRLTWLGATDDGYVGLSEKGEW CEEEECCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCE VSWSMNTDTFATSSVKVADSLVIKPLDFSAPTQCETQEQRQDILSKERPNPEVKMWSFSE EEEECCCCCEECCCEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA