Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120597593

Identifier: 120597593

GI number: 120597593

Start: 846884

End: 848074

Strand: Direct

Name: 120597593

Synonym: Sputw3181_0762

Alternate gene names: NA

Gene position: 846884-848074 (Clockwise)

Preceding gene: 120597592

Following gene: 120597597

Centisome position: 17.99

GC content: 43.66

Gene sequence:

>1191_bases
ATGAAACGACTTCAATCCAGTTTATTGCTGTGTTTGTCAGTTTGGACCTCCATGAGTTATAGCCAGACCCTAGATACAGA
GGCGTTGCGATTGTTACAGGTGTCACTAGACGATTCGATGTTAAATACACAAACTCAGTTAACCAATACTAAAAGAGCTT
TAGCATTAGATCTAAGCCATCAATATGCGCAGCTTGAACCTATTTTACAGATGGAAATAAACCAGTATCAGCTAGCAGTG
AATGCTGATGCAATCCTATCCCAACATACGCTTAATAGTCAGGTGATGACCAAAGCCGATGCCTCTATCCGCCGGGCGAA
AGGGCTAAACTTAAGTGCGCAAGCGGATTCGTTGGTACAAGTGCGTTTGGCAGATGCGACTATGTTAGGGGCTTGGCAGC
AAGGAGAATTGCCCTTATTTGCCTTTGAACCTGAGGGAGACGAGCGTCAGTGGGATTATATTGAAGCCTTTGATATTTAT
GGACAGGTGCATCAGTTAGATGTGTATAACCTGCCGCAGCAGCCAGTGTTTGTGGTTGGTATTGATAGTAAAAAAGCCTT
TATTGCTGGATTAAAGGTGATGCGATCTACTTTTGCCGAAGCACAAGTTAAACAAGGTGACAGGGCCTTTTTGAACCGTT
CATCAAGTAAAGCGGTCGCCGATAAACCTATTTCAACTACAGTGATCAAGCAGATATCTTTGAAGGATGATCATGAACCT
TGGATTTCTGGGGCTGCCGAGATTTATGCCATAGTGACAGGAGTTGACCCGAGTCGCGATAAACCAGTGCTCGATATTGT
CGAAATGCCCTATTTAGATTATGCAGATACGACTTATTATCCAAATCAAGTCATTATTCATTGGGAGCGTTATCGCTGGG
CTGCTGCGGATGTGATTTTAATGGAGCACGATGATGGCACTAACTATAAAGTGCTGGCGACTAAGTTGTTGGAAGCGGCT
GAGCAGATCTTAAAATCCATCCCCGATCCTGAAGCTCAGGGCTATGCACTGATCCCACAAATCACTAATGGTATTCTAAG
TGCGATGCCAGATGCGTGGTTTACTAATGACGATGATTTTGTCGACGTATATTACACATTACAAGAAGGGCTGGATTATC
CTAACTTGAATGGTGCTAATGGCAATGCGATGACGACTTTTTCCCCGCTTGTTATTCAACCTAGGCATTAA

Upstream 100 bases:

>100_bases
AACGATAATTATTATCATTTAATTTACTTGGATTCGGGTCTGTGTTCATATGTAGGGAATTCGAACGCACGTTTAACTTT
TTAACGGTAAGGAAACTCCT

Downstream 100 bases:

>100_bases
AAACTTACGGCTATCCCGTCCTAAGATAGAAAAAGCGGATCCTAAGATCCGCTTTTTTGTAAAGTGAACGCGAGCCTAGC
TCAATCTATGCACTTTATTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MKRLQSSLLLCLSVWTSMSYSQTLDTEALRLLQVSLDDSMLNTQTQLTNTKRALALDLSHQYAQLEPILQMEINQYQLAV
NADAILSQHTLNSQVMTKADASIRRAKGLNLSAQADSLVQVRLADATMLGAWQQGELPLFAFEPEGDERQWDYIEAFDIY
GQVHQLDVYNLPQQPVFVVGIDSKKAFIAGLKVMRSTFAEAQVKQGDRAFLNRSSSKAVADKPISTTVIKQISLKDDHEP
WISGAAEIYAIVTGVDPSRDKPVLDIVEMPYLDYADTTYYPNQVIIHWERYRWAAADVILMEHDDGTNYKVLATKLLEAA
EQILKSIPDPEAQGYALIPQITNGILSAMPDAWFTNDDDFVDVYYTLQEGLDYPNLNGANGNAMTTFSPLVIQPRH

Sequences:

>Translated_396_residues
MKRLQSSLLLCLSVWTSMSYSQTLDTEALRLLQVSLDDSMLNTQTQLTNTKRALALDLSHQYAQLEPILQMEINQYQLAV
NADAILSQHTLNSQVMTKADASIRRAKGLNLSAQADSLVQVRLADATMLGAWQQGELPLFAFEPEGDERQWDYIEAFDIY
GQVHQLDVYNLPQQPVFVVGIDSKKAFIAGLKVMRSTFAEAQVKQGDRAFLNRSSSKAVADKPISTTVIKQISLKDDHEP
WISGAAEIYAIVTGVDPSRDKPVLDIVEMPYLDYADTTYYPNQVIIHWERYRWAAADVILMEHDDGTNYKVLATKLLEAA
EQILKSIPDPEAQGYALIPQITNGILSAMPDAWFTNDDDFVDVYYTLQEGLDYPNLNGANGNAMTTFSPLVIQPRH
>Mature_396_residues
MKRLQSSLLLCLSVWTSMSYSQTLDTEALRLLQVSLDDSMLNTQTQLTNTKRALALDLSHQYAQLEPILQMEINQYQLAV
NADAILSQHTLNSQVMTKADASIRRAKGLNLSAQADSLVQVRLADATMLGAWQQGELPLFAFEPEGDERQWDYIEAFDIY
GQVHQLDVYNLPQQPVFVVGIDSKKAFIAGLKVMRSTFAEAQVKQGDRAFLNRSSSKAVADKPISTTVIKQISLKDDHEP
WISGAAEIYAIVTGVDPSRDKPVLDIVEMPYLDYADTTYYPNQVIIHWERYRWAAADVILMEHDDGTNYKVLATKLLEAA
EQILKSIPDPEAQGYALIPQITNGILSAMPDAWFTNDDDFVDVYYTLQEGLDYPNLNGANGNAMTTFSPLVIQPRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44368; Mature: 44368

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLQSSLLLCLSVWTSMSYSQTLDTEALRLLQVSLDDSMLNTQTQLTNTKRALALDLSH
CCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHEECCCHHHHHHHHHCCCCCEEEEECCH
QYAQLEPILQMEINQYQLAVNADAILSQHTLNSQVMTKADASIRRAKGLNLSAQADSLVQ
HHHHHCHHHEEECCEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE
VRLADATMLGAWQQGELPLFAFEPEGDERQWDYIEAFDIYGQVHQLDVYNLPQQPVFVVG
EEEECEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCEEEEE
IDSKKAFIAGLKVMRSTFAEAQVKQGDRAFLNRSSSKAVADKPISTTVIKQISLKDDHEP
ECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHEECCCCCCCH
WISGAAEIYAIVTGVDPSRDKPVLDIVEMPYLDYADTTYYPNQVIIHWERYRWAAADVIL
HHCCCEEEEEEEECCCCCCCCCCEEHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEE
MEHDDGTNYKVLATKLLEAAEQILKSIPDPEAQGYALIPQITNGILSAMPDAWFTNDDDF
EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCE
VDVYYTLQEGLDYPNLNGANGNAMTTFSPLVIQPRH
EEEEEEHHHCCCCCCCCCCCCCEEEEECCEEEECCC
>Mature Secondary Structure
MKRLQSSLLLCLSVWTSMSYSQTLDTEALRLLQVSLDDSMLNTQTQLTNTKRALALDLSH
CCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHEECCCHHHHHHHHHCCCCCEEEEECCH
QYAQLEPILQMEINQYQLAVNADAILSQHTLNSQVMTKADASIRRAKGLNLSAQADSLVQ
HHHHHCHHHEEECCEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE
VRLADATMLGAWQQGELPLFAFEPEGDERQWDYIEAFDIYGQVHQLDVYNLPQQPVFVVG
EEEECEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCEEEEE
IDSKKAFIAGLKVMRSTFAEAQVKQGDRAFLNRSSSKAVADKPISTTVIKQISLKDDHEP
ECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHEECCCCCCCH
WISGAAEIYAIVTGVDPSRDKPVLDIVEMPYLDYADTTYYPNQVIIHWERYRWAAADVIL
HHCCCEEEEEEEECCCCCCCCCCEEHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEE
MEHDDGTNYKVLATKLLEAAEQILKSIPDPEAQGYALIPQITNGILSAMPDAWFTNDDDF
EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCE
VDVYYTLQEGLDYPNLNGANGNAMTTFSPLVIQPRH
EEEEEEHHHCCCCCCCCCCCCCEEEEECCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA