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The map label for this gene is yidZ [H]

Identifier: 120597511

GI number: 120597511

Start: 752888

End: 753310

Strand: Direct

Name: yidZ [H]

Synonym: Sputw3181_0680

Alternate gene names: 120597511

Gene position: 752888-753310 (Clockwise)

Preceding gene: 120597510

Following gene: 120597512

Centisome position: 15.99

GC content: 45.63

Gene sequence:

>423_bases
GTGTATTTACGCCGCGATCATCCCGCCTTGCAGGAAGAGTGGAATATAGACACCTTTCTTAAATATTCGCATATCAATAT
CTTGTGGGAAAAGAGCGAAACTTGGGCCTTGGATGATGTGCTTATTGAGCTTGGGTTAACTCGCAATATTGTGCTGACCT
TGGCCTGTTTTGAGCAGTCACTGTTTGTCGCGGCAGAGCCTCACCACAACATGATGGCAATTGCGCCACAATATTGCGAA
CAATATGCTCGCCAATTACACCCTGACTTAGTCAGTCGCCCCATCCCGTTAAGCGACGAATATCTTGATAAACTCGCCAT
TCCTTTTACCTTGATTTGGCATAAGAGAAACAGCCACAACCCCAAAATCACTTGGTTGCGAAACAGGATAAAAGCGATTT
ATCAGCCGCGTGCGCATGATTAA

Upstream 100 bases:

>100_bases
GTGAAACTAGGCTAGGCGCAACTTATGTGTGAGATGGCTAATGGGGTGAGGTATATGTTTCGATATCTATTGTGCAGTTT
TATTTACCGATCTTCCTCAG

Downstream 100 bases:

>100_bases
GACGTTAAGCTTCACAGAGGATATATGTTAGAACTGTTGACTCCTTTAAAGAAGACTGTAAATCAGTCTGCAAAAGATGA
CCTAGAGTACTGGCTAAGTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MYLRRDHPALQEEWNIDTFLKYSHINILWEKSETWALDDVLIELGLTRNIVLTLACFEQSLFVAAEPHHNMMAIAPQYCE
QYARQLHPDLVSRPIPLSDEYLDKLAIPFTLIWHKRNSHNPKITWLRNRIKAIYQPRAHD

Sequences:

>Translated_140_residues
MYLRRDHPALQEEWNIDTFLKYSHINILWEKSETWALDDVLIELGLTRNIVLTLACFEQSLFVAAEPHHNMMAIAPQYCE
QYARQLHPDLVSRPIPLSDEYLDKLAIPFTLIWHKRNSHNPKITWLRNRIKAIYQPRAHD
>Mature_140_residues
MYLRRDHPALQEEWNIDTFLKYSHINILWEKSETWALDDVLIELGLTRNIVLTLACFEQSLFVAAEPHHNMMAIAPQYCE
QYARQLHPDLVSRPIPLSDEYLDKLAIPFTLIWHKRNSHNPKITWLRNRIKAIYQPRAHD

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=139, Percent_Identity=57.5539568345324, Blast_Score=166, Evalue=6e-43,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 16672; Mature: 16672

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLRRDHPALQEEWNIDTFLKYSHINILWEKSETWALDDVLIELGLTRNIVLTLACFEQS
CCCCCCCCCCHHCCCCHHEEEEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHEECCCC
LFVAAEPHHNMMAIAPQYCEQYARQLHPDLVSRPIPLSDEYLDKLAIPFTLIWHKRNSHN
EEEEECCCCCEEEECHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHCCCEEEEEECCCCCC
PKITWLRNRIKAIYQPRAHD
CEEHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYLRRDHPALQEEWNIDTFLKYSHINILWEKSETWALDDVLIELGLTRNIVLTLACFEQS
CCCCCCCCCCHHCCCCHHEEEEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHEECCCC
LFVAAEPHHNMMAIAPQYCEQYARQLHPDLVSRPIPLSDEYLDKLAIPFTLIWHKRNSHN
EEEEECCCCCEEEECHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHCCCEEEEEECCCCCC
PKITWLRNRIKAIYQPRAHD
CEEHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA