| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is nudH [C]
Identifier: 120597396
GI number: 120597396
Start: 618772
End: 619209
Strand: Direct
Name: nudH [C]
Synonym: Sputw3181_0565
Alternate gene names: 120597396
Gene position: 618772-619209 (Clockwise)
Preceding gene: 120597390
Following gene: 120597399
Centisome position: 13.14
GC content: 48.4
Gene sequence:
>438_bases GTGGCCTTTAACGATACCTTTAGATTGAGCAGCCACGCGGTTATTACCAATGCGCTGGGACAAGTGCTGTTGCTTAAGGC CAATTACGGTAATTTTGCTTGGGGTTTACCCGGCGGCGCACTCGAACCAGGCGAAACGATTCACGAGGCCTTGGTGCGTG AATGCCAAGAGGAATTAGGCTTAAGTGTGCGGGTGAACTATTTGAGCGGTGTGTATTATCACAGCGCTTATCAGTCCCAA GCCTTTATTTTTCGATGCGAATTACTGTTGCCTGAAGTGGCAAAAGATGGGGTAGAAGACGAGCTATTGCCGATCCAATT AAGTCACGAACACTCAGCGTTCGCCTTCCACGATATCGACACCCTTAGCACGGTTCAGCAGCAAAGAATTAAAGATTGCC TCAATTTCAACGGGGTTGTGGTGAGTGCCAAGTTCTAA
Upstream 100 bases:
>100_bases GCTATAAGCGGTTTAAGCAAAGAGTTAAGGAATGCGAAGCGTTGGCGTGACACAGAAAGAAGCTTCAATTCGTACCGAAC AGACATGCAAGGATAATTGA
Downstream 100 bases:
>100_bases TGCTTTGCCAGTAAACCGCCGGCTGTTAATCGGCTTGGGTTTGCGCGAGTAAAGTTTCTAAGCAGTGTTCCTTGATACCG TAATAGGCTTTAATGTCTGC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: MutT/Nudix Family Protein; MutT-Like Protein
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MAFNDTFRLSSHAVITNALGQVLLLKANYGNFAWGLPGGALEPGETIHEALVRECQEELGLSVRVNYLSGVYYHSAYQSQ AFIFRCELLLPEVAKDGVEDELLPIQLSHEHSAFAFHDIDTLSTVQQQRIKDCLNFNGVVVSAKF
Sequences:
>Translated_145_residues MAFNDTFRLSSHAVITNALGQVLLLKANYGNFAWGLPGGALEPGETIHEALVRECQEELGLSVRVNYLSGVYYHSAYQSQ AFIFRCELLLPEVAKDGVEDELLPIQLSHEHSAFAFHDIDTLSTVQQQRIKDCLNFNGVVVSAKF >Mature_144_residues AFNDTFRLSSHAVITNALGQVLLLKANYGNFAWGLPGGALEPGETIHEALVRECQEELGLSVRVNYLSGVYYHSAYQSQA FIFRCELLLPEVAKDGVEDELLPIQLSHEHSAFAFHDIDTLSTVQQQRIKDCLNFNGVVVSAKF
Specific function: Preferentially Hydrolyzes Diadenosine Penta-Phosphate With ATP As One Of The Reaction Products. Also Able To Hydrolyze Diadenosine Hexa- And Tetra-Phosphate. Has No Activity On Diadenosine Tri-Phosphate, Adp-Ribose, NADH And Udp-Glucose. In The Meningitis
COG id: COG1051
COG function: function code F; ADP-ribose pyrophosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.6.1.- [C]
Molecular weight: Translated: 16114; Mature: 15983
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFNDTFRLSSHAVITNALGQVLLLKANYGNFAWGLPGGALEPGETIHEALVRECQEELG CCCCCCEECCCCHHHHHHCCEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCC LSVRVNYLSGVYYHSAYQSQAFIFRCELLLPEVAKDGVEDELLPIQLSHEHSAFAFHDID CEEEEEEHHCCHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECHH TLSTVQQQRIKDCLNFNGVVVSAKF HHHHHHHHHHHHHHCCCCEEEEECC >Mature Secondary Structure AFNDTFRLSSHAVITNALGQVLLLKANYGNFAWGLPGGALEPGETIHEALVRECQEELG CCCCCEECCCCHHHHHHCCEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCC LSVRVNYLSGVYYHSAYQSQAFIFRCELLLPEVAKDGVEDELLPIQLSHEHSAFAFHDID CEEEEEEHHCCHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECHH TLSTVQQQRIKDCLNFNGVVVSAKF HHHHHHHHHHHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA