| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597240
Identifier: 120597240
GI number: 120597240
Start: 451758
End: 452612
Strand: Direct
Name: 120597240
Synonym: Sputw3181_0409
Alternate gene names: NA
Gene position: 451758-452612 (Clockwise)
Preceding gene: 120597239
Following gene: 120597241
Centisome position: 9.59
GC content: 47.72
Gene sequence:
>855_bases ATGACAAATGTGATTGCTTGTATTGACGGTTCAAATGTGACATCCGCTGTATGTGATGCCAGTGGCTGGGCCGCCTTTCA ACTGAATGCCCCTGTAATCCTATTACATGTATTGGATAAGTCAGCCTATCCGATAGAGTCAGATCTGTCGGGAAATATTG GCCTAGGTACACGGGAGCACTTGCTCAATGAAATGGTTGAGCTCGAAGCGCGCCGGGGCAAGCTGGCACTCGAGCAGGGT AAGTATATGTTGCAAGATGCGCAAACGCGCATCGTGGAGGCACAACCTGCAGTCGTGGTTAAAACCTTGCAGCGTCACGG CGATTTAGTCGAAACCCTGTTAGAGCAAGAATCCCATGCCAGATTGGTGGTGATGGGGCGTCAAGGGGAGCAACATCAAG ATCAAGCGCAGGCGATTGGCAGCCATCTAGAAAACGTCATTCGCACAGTTAAGCAGCCTATTTTAGTGGTGATGACAGAG TTTGAAGCACCGAAACGATTTATGATTGCCTACGATGGCAGCATTACTGCGAAAAAAGCCCTTAATCAAGTGCTAACAAG TCCACTCTTAAAAGGGCTTGAATGTCATTTGGTGATGGTGTCTGATGCTCAATCACAGGCGACAGCAGAACTGGCGTTGG TGACCGAATCTCTGATGGCGGCGAATTTCAATGTGGTTACCGCTGTTTGTCAGGGAGAAGTTCAAACGGCTCTTGAGATC TATCAACTTGAGCATCACATCGATCTTATGGTGATGGGGGCCTACGGCCATTCGCGGATAAGAGAGTTTTTTGTGGGAAG CAATACCACAAAGATGATCAGTAAAAGCCATATCCCATTATTATTATTGCGCTAA
Upstream 100 bases:
>100_bases ATAGTCGATAAATTTGGGGTACACGATAAGCCAGAAGAAGTTGAAAAAATGATGTCTGGTCACTAAGCCATTAGCAACAC AACAACAAAGGAATAAAACG
Downstream 100 bases:
>100_bases CAGCTATTGATATTGCACTAATCAGTATCCAAGACGCTGGTTAGTGCATAGTAATAGAGATAGGTTCTGACGCTTAAGTT TGGAGGTGAAATGAACGAGC
Product: UspA domain-containing protein
Products: NA
Alternate protein names: USP Slr1230 [H]
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MTNVIACIDGSNVTSAVCDASGWAAFQLNAPVILLHVLDKSAYPIESDLSGNIGLGTREHLLNEMVELEARRGKLALEQG KYMLQDAQTRIVEAQPAVVVKTLQRHGDLVETLLEQESHARLVVMGRQGEQHQDQAQAIGSHLENVIRTVKQPILVVMTE FEAPKRFMIAYDGSITAKKALNQVLTSPLLKGLECHLVMVSDAQSQATAELALVTESLMAANFNVVTAVCQGEVQTALEI YQLEHHIDLMVMGAYGHSRIREFFVGSNTTKMISKSHIPLLLLR
Sequences:
>Translated_284_residues MTNVIACIDGSNVTSAVCDASGWAAFQLNAPVILLHVLDKSAYPIESDLSGNIGLGTREHLLNEMVELEARRGKLALEQG KYMLQDAQTRIVEAQPAVVVKTLQRHGDLVETLLEQESHARLVVMGRQGEQHQDQAQAIGSHLENVIRTVKQPILVVMTE FEAPKRFMIAYDGSITAKKALNQVLTSPLLKGLECHLVMVSDAQSQATAELALVTESLMAANFNVVTAVCQGEVQTALEI YQLEHHIDLMVMGAYGHSRIREFFVGSNTTKMISKSHIPLLLLR >Mature_283_residues TNVIACIDGSNVTSAVCDASGWAAFQLNAPVILLHVLDKSAYPIESDLSGNIGLGTREHLLNEMVELEARRGKLALEQGK YMLQDAQTRIVEAQPAVVVKTLQRHGDLVETLLEQESHARLVVMGRQGEQHQDQAQAIGSHLENVIRTVKQPILVVMTEF EAPKRFMIAYDGSITAKKALNQVLTSPLLKGLECHLVMVSDAQSQATAELALVTESLMAANFNVVTAVCQGEVQTALEIY QLEHHIDLMVMGAYGHSRIREFFVGSNTTKMISKSHIPLLLLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the universal stress protein A family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014729 - InterPro: IPR006015 - InterPro: IPR006016 [H]
Pfam domain/function: PF00582 Usp [H]
EC number: NA
Molecular weight: Translated: 31176; Mature: 31044
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNVIACIDGSNVTSAVCDASGWAAFQLNAPVILLHVLDKSAYPIESDLSGNIGLGTREH CCCEEEEECCCCCHHHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH LLNEMVELEARRGKLALEQGKYMLQDAQTRIVEAQPAVVVKTLQRHGDLVETLLEQESHA HHHHHHHHHHHCCCEEHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCC RLVVMGRQGEQHQDQAQAIGSHLENVIRTVKQPILVVMTEFEAPKRFMIAYDGSITAKKA EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCHHHHH LNQVLTSPLLKGLECHLVMVSDAQSQATAELALVTESLMAANFNVVTAVCQGEVQTALEI HHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHH YQLEHHIDLMVMGAYGHSRIREFFVGSNTTKMISKSHIPLLLLR HHHHCCEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCCEEEEC >Mature Secondary Structure TNVIACIDGSNVTSAVCDASGWAAFQLNAPVILLHVLDKSAYPIESDLSGNIGLGTREH CCEEEEECCCCCHHHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHH LLNEMVELEARRGKLALEQGKYMLQDAQTRIVEAQPAVVVKTLQRHGDLVETLLEQESHA HHHHHHHHHHHCCCEEHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCC RLVVMGRQGEQHQDQAQAIGSHLENVIRTVKQPILVVMTEFEAPKRFMIAYDGSITAKKA EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCHHHHH LNQVLTSPLLKGLECHLVMVSDAQSQATAELALVTESLMAANFNVVTAVCQGEVQTALEI HHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHH YQLEHHIDLMVMGAYGHSRIREFFVGSNTTKMISKSHIPLLLLR HHHHCCEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]