| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is secA
Identifier: 120597229
GI number: 120597229
Start: 430429
End: 433158
Strand: Direct
Name: secA
Synonym: Sputw3181_0398
Alternate gene names: 120597229
Gene position: 430429-433158 (Clockwise)
Preceding gene: 120597228
Following gene: 120597231
Centisome position: 9.14
GC content: 44.87
Gene sequence:
>2730_bases ATGTTTGGTAAATTACTGACAAAAGTATTTGGTAGCCGTAATGATCGTACCCTTAAAGGGTTGCAAAAGGTCGTTATTAA AATTAATGCACTCGAAGCTGATTATGAAAAGTTAACCGATGAAGAGCTAAAAGCAAAAACGGCTGAGTTCCGTGAGCGAT TAGCTGCAGGTGAAACTCTCGATGACATCATGGCAGAAGCGTTTGCTACAGTTCGTGAGGCATCCAAGCGTGTGTTTGAA ATGCGTCACTTCGATGTGCAATTACTTGGTGGTATGGTGCTTGATAGCAACCGTATTGCTGAAATGCGTACGGGTGAAGG TAAAACCCTAACGGCAACCTTACCAGCTTATCTCAATGCGCTGACTGGCAAAGGTGTTCACGTGATCACTGTGAACGACT ACTTAGCACGTCGTGATGCTGAGAATAACCGCCCATTATTTGAGTTTCTTGGTTTAACCGTTGGGATTAACGTCGCAGGT ATTGGTCAGCAAGAAAAGAAAGCTGCTTATAATGCCGATATTACCTACGGTACTAACAATGAATTTGGTTTCGATTATCT GCGCGATAATATGGCATTTTCGCCACAGGATCGCGTACAACGCCCATTGCACTACGCCCTTATCGATGAAGTTGACTCAA TTTTAATCGACGAAGCGCGTACGCCATTAATTATCTCTGGCGCCGCTGAAGATAGCTCTGAGTTATACACTAAGATTAAT ACCCTTATCCCAAATCTTATTCGTCAGGATAAAGAAGATTCCGAAGAGTATGTGGGAGAGGGCGATTACAGTATTGATGA AAAAGCCAAACAAGTGCATTTCACTGAGCGCGGTCAAGAGAAAGTAGAAAACTTGCTGATCGAGCGCGGTATGTTAGCAG AAGGTGACTCTCTCTATTCTGCTGCCAATATCTCTCTACTGCACCATGTTAATGCAGCACTACGGGCACATACACTATTT GAGCGTGATGTTGACTATATCGTTCAAGATGGCGAAGTAATTATCGTTGATGAACATACTGGCCGTACTATGCCAGGTCG TCGTTGGTCTGAAGGTTTACATCAAGCCGTAGAAGCCAAAGAAGGCGTGCATATTCAGAACGAAAACCAGACGTTAGCTT CAATCACTTTCCAGAACTACTTCCGTCAATACGAGAAGCTGGCAGGTATGACAGGTACAGCCGATACTGAAGCGTTCGAA TTCCAGCACATTTATGGATTAGATACAGTCGTTGTACCAACCAACCGTCCAATGGTCCGTAAAGATATGGCCGACTTGGT TTACTTAACCGCCAATGAAAAGTATCAAGCCATTATTAAAGATATTAAAGATTGCCGCGAACGTGGTCAGCCAGTATTGG TGGGTACAGTATCAATCGAACAGTCTGAGCTATTAGCACGCTTAATGGTGCAGGAAAAGATCCCGCACCAAGTGCTTAAC GCCAAGTTCCATGAAAAAGAAGCGGAAATTGTCGCGCAAGCAGGTCGTACTGGCGCCGTGACTATTGCTACTAACATGGC GGGTCGTGGTACTGACATCGTGCTCGGTGGCAACTGGAATATGGAAATAGATGCCCTCGATAATCCAACTCCAGAGCAAA AAGCCAAGATCAAAGCCGATTGGCAAGTGCGACATGATGCTGTCGTCGCTGCGGGCGGTTTGCATATTTTAGGTACTGAG CGTCACGAATCTCGCCGCATTGACAACCAATTACGTGGACGTGCGGGTCGTCAAGGTGACGCAGGTTCTTCACGTTTTTA TTTATCTATGGAAGATAGCTTAATGCGTATCTTCGCCTCTGATCGTGTCTCTGGCATGATGAAAAAGCTGGGCATGGAAG AAGGCGAAGCCATCGAGCATCCATGGGTATCACGCGCAATCGAAAACGCACAACGTAAAGTTGAAGCGCGTAACTTCGAT ATCCGCAAGCAATTACTTGAGTTTGACGATGTAGCAAACGATCAACGTCAAGTGGTTTACGCTCAGCGTAACGAGTTAAT GGATGCTGAAAGTATTGAAGATACTATTAAAAACATCCAAGACGATGTGATTGGCGCAGTTATAGATCAGTATATTCCAC CGCAATCAGTAGAAGAGTTATGGGATGTTCCAGGTTTAGAGCAGCGCCTAAACCAAGAATTTATGCTTAAACTGCCAATT CAAGAATGGTTAGATAAAGAAGACGACTTACATGAAGAAAGTCTGCGTGAGCGTATTATCACCTCTTGGTCTGATGCTTA TAAGGCGAAAGAAGAAATGGTCGGTGCCTCAGTACTGCGCCAATTCGAAAAAGCAGTGATGCTACAAACCCTCGATGGCT TGTGGAAAGAGCATTTAGCAGCAATGGATCATTTACGTCAAGGTATCCACTTACGTGGTTACGCGCAGAAGAATCCAAAG CAAGAGTATAAGCGTGAGTCATTCGAGCTGTTCCAACAATTGCTGAATACGCTGAAACATGACGTGATTAGCGTGTTGTC TAAAGTTCAAGTGCAAGCTCAGTCAGATGTTGAAGAAATGGAAGCGCGTCGTCGTGAAGAAGATGCTAAGATCCAACGCG ACTATCAACATGCAGCCGCAGAAGCGTTAGTCGGTGGTGGTGATGAAGATGACGAATCTATCGCTGCACATACACCGATG ATCCGTGACGGTGATAAAGTGGGTCGTAACGATCCTTGTCCATGCGGTTCAGGACGTAAGTATAAGCAATGCCATGGTAA GTTAAGCTAA
Upstream 100 bases:
>100_bases GATAGATCCACAAAAGTTTGTCTACCGCAAAGCAAGTTAATTGAAACATTGGCTTCTAGTTTCCATCATGGACTTGGCCT ACAGAGAATAAGTGATTCAG
Downstream 100 bases:
>100_bases TCTGCTGCACGACTTACTGACATTACTTCTATCGAATAGATTGATTAGAACACTAAAGGCAACTTATCGAAGTTGCCTTT TTATTTTCCTTTAATAAACC
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 909; Mature: 909
Protein sequence:
>909_residues MFGKLLTKVFGSRNDRTLKGLQKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETLDDIMAEAFATVREASKRVFE MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG IGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYTKIN TLIPNLIRQDKEDSEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLF ERDVDYIVQDGEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFE FQHIYGLDTVVVPTNRPMVRKDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVQEKIPHQVLN AKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIDALDNPTPEQKAKIKADWQVRHDAVVAAGGLHILGTE RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFD IRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKNIQDDVIGAVIDQYIPPQSVEELWDVPGLEQRLNQEFMLKLPI QEWLDKEDDLHEESLRERIITSWSDAYKAKEEMVGASVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFQQLLNTLKHDVISVLSKVQVQAQSDVEEMEARRREEDAKIQRDYQHAAAEALVGGGDEDDESIAAHTPM IRDGDKVGRNDPCPCGSGRKYKQCHGKLS
Sequences:
>Translated_909_residues MFGKLLTKVFGSRNDRTLKGLQKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETLDDIMAEAFATVREASKRVFE MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG IGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYTKIN TLIPNLIRQDKEDSEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLF ERDVDYIVQDGEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFE FQHIYGLDTVVVPTNRPMVRKDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVQEKIPHQVLN AKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIDALDNPTPEQKAKIKADWQVRHDAVVAAGGLHILGTE RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFD IRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKNIQDDVIGAVIDQYIPPQSVEELWDVPGLEQRLNQEFMLKLPI QEWLDKEDDLHEESLRERIITSWSDAYKAKEEMVGASVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFQQLLNTLKHDVISVLSKVQVQAQSDVEEMEARRREEDAKIQRDYQHAAAEALVGGGDEDDESIAAHTPM IRDGDKVGRNDPCPCGSGRKYKQCHGKLS >Mature_909_residues MFGKLLTKVFGSRNDRTLKGLQKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETLDDIMAEAFATVREASKRVFE MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG IGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYTKIN TLIPNLIRQDKEDSEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLF ERDVDYIVQDGEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFE FQHIYGLDTVVVPTNRPMVRKDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVQEKIPHQVLN AKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIDALDNPTPEQKAKIKADWQVRHDAVVAAGGLHILGTE RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFD IRKQLLEFDDVANDQRQVVYAQRNELMDAESIEDTIKNIQDDVIGAVIDQYIPPQSVEELWDVPGLEQRLNQEFMLKLPI QEWLDKEDDLHEESLRERIITSWSDAYKAKEEMVGASVLRQFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFQQLLNTLKHDVISVLSKVQVQAQSDVEEMEARRREEDAKIQRDYQHAAAEALVGGGDEDDESIAAHTPM IRDGDKVGRNDPCPCGSGRKYKQCHGKLS
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity)
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family
Homologues:
Organism=Escherichia coli, GI1786287, Length=909, Percent_Identity=72.6072607260726, Blast_Score=1372, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SECA_SHEPC (A4Y2P4)
Other databases:
- EMBL: CP000681 - RefSeq: YP_001182026.1 - ProteinModelPortal: A4Y2P4 - SMR: A4Y2P4 - STRING: A4Y2P4 - GeneID: 5078436 - GenomeReviews: CP000681_GR - KEGG: spc:Sputcn32_0495 - eggNOG: COG0653 - HOGENOM: HBG284200 - OMA: GGMVLHD - PhylomeDB: A4Y2P4 - ProtClustDB: PRK13107 - GO: GO:0005737 - HAMAP: MF_01382 - InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 - Gene3D: G3DSA:1.10.3060.10 - PRINTS: PR00906 - SMART: SM00957 - SMART: SM00958 - TIGRFAMs: TIGR00963
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW; SSF81767 SecA_PP_bd; SSF81886 SecA_SW
EC number: NA
Molecular weight: Translated: 102742; Mature: 102742
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS01312 SECA; PS51196 SECA_MOTOR_DEAD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGKLLTKVFGSRNDRTLKGLQKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETL CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCH DDIMAEAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEECCCCCEEEEEHHHHHHH LTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGIGQQEKKAAYNADITYGTNN HCCCCEEEEEECHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCHHHHHHCCCEEEECCCC EFGFDYLRDNMAFSPQDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYTKIN CCCHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH TLIPNLIRQDKEDSEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS HHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH AANISLLHHVNAALRAHTLFERDVDYIVQDGEVIIVDEHTGRTMPGRRWSEGLHQAVEAK HHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHH EGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVR CCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEECCCEEEECCCCCHHH KDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVQEKIPHQVLN HHHHHEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCHHHHC AKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIDALDNPTPEQKAKIKAD CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCHHCEEEEC WQVRHDAVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFAS EEECCCEEEEECCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHH DRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVY HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHH AQRNELMDAESIEDTIKNIQDDVIGAVIDQYIPPQSVEELWDVPGLEQRLNQEFMLKLPI HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHCCCHHEEEECH QEWLDKEDDLHEESLRERIITSWSDAYKAKEEMVGASVLRQFEKAVMLQTLDGLWKEHLA HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQLLNTLKHDVISVLSKVQVQAQSDVEEM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH EARRREEDAKIQRDYQHAAAEALVGGGDEDDESIAAHTPMIRDGDKVGRNDPCPCGSGRK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC YKQCHGKLS HHHHCCCCC >Mature Secondary Structure MFGKLLTKVFGSRNDRTLKGLQKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETL CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCH DDIMAEAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEECCCCCEEEEEHHHHHHH LTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGIGQQEKKAAYNADITYGTNN HCCCCEEEEEECHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCHHHHHHCCCEEEECCCC EFGFDYLRDNMAFSPQDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYTKIN CCCHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH TLIPNLIRQDKEDSEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS HHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH AANISLLHHVNAALRAHTLFERDVDYIVQDGEVIIVDEHTGRTMPGRRWSEGLHQAVEAK HHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHH EGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVR CCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEECCCEEEECCCCCHHH KDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVQEKIPHQVLN HHHHHEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCHHHHC AKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIDALDNPTPEQKAKIKAD CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCHHCEEEEC WQVRHDAVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFAS EEECCCEEEEECCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHH DRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVY HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHH AQRNELMDAESIEDTIKNIQDDVIGAVIDQYIPPQSVEELWDVPGLEQRLNQEFMLKLPI HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHCCCHHEEEECH QEWLDKEDDLHEESLRERIITSWSDAYKAKEEMVGASVLRQFEKAVMLQTLDGLWKEHLA HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQLLNTLKHDVISVLSKVQVQAQSDVEEM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH EARRREEDAKIQRDYQHAAAEALVGGGDEDDESIAAHTPMIRDGDKVGRNDPCPCGSGRK HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC YKQCHGKLS HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA