| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597187
Identifier: 120597187
GI number: 120597187
Start: 384231
End: 384962
Strand: Direct
Name: 120597187
Synonym: Sputw3181_0356
Alternate gene names: NA
Gene position: 384231-384962 (Clockwise)
Preceding gene: 120597186
Following gene: 120597188
Centisome position: 8.16
GC content: 37.98
Gene sequence:
>732_bases ATGCCAACTTTACTGTGGGTTAAAATGCCTTCGGATTGGCTTGGTAAAGGAATACTTCGTGAACACTTTAGTTCACGAAG AGAGAAAGATATTTCCGGTGAAATTTCAGCACTAAAAATTTATATCTGTTTGTGCTTATATAGTGACCGAAAAATGATTC CGTACCCGCCAATATTACAGGTTCACTTGAAAGTGTTGAGGGAAAGGGAGTTGATTGGGTCTAGTTTGACGTATGATCAA CTTTCAGAATACTGCTCTTTAAGTCGGGTTTTAGTGTCAAGGGGCCTTAAGAAGTTAATCTCTTGCGGCTTAATTCATAA ACAAGGTACTACAAGGAAGGTAGTATATGAGATTGTAGGCTTATCAATTTCAGGATGGTGTAAGTTACCTTGCCGAGCGT TATTAGGTCCAAACGGTCGTGTGGTTTCCTTTACAGGGTTGAAGAATCGATACCCATCAGAAAGAGATGCGTTAAAGTTG TTTCTCTATCTTTTGTCTATACGCCAAAATAGCCTCAGTGAAGTATCAGTCTCCAGAGGGAAAATATCTCAAACTACAGG ACTAAGTGTATACGATATCGATTCTTCTATAGGAGTGTTACGAGCAATAGAACTTATTGAAGATGTAAAAAGTTTGGGGT ACAAAATGAACACAAGTTCTCTTCCTCAAGAAAGTGATAGGCTCGCTCAGTACTTAGTTAAAGGAGGTAAAAGTTTAAAC CTAAAAAAATAA
Upstream 100 bases:
>100_bases AGATTCATAAGGAACTGATTTTATTATTAATAACAGTAATTGCATTGGTCAGTGGATATGGTGTTGAGTTTATTGGTTCA ATATTAGGAAAACTCTAAAT
Downstream 100 bases:
>100_bases TATTTTGATGGTTTACTCTAGCTGTATAAAGACAATCTAAAAGATGAGCGTACTAATCTAGATAAAGATTCGGACATTAA AATTGAGCCCGCGAATCACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MPTLLWVKMPSDWLGKGILREHFSSRREKDISGEISALKIYICLCLYSDRKMIPYPPILQVHLKVLRERELIGSSLTYDQ LSEYCSLSRVLVSRGLKKLISCGLIHKQGTTRKVVYEIVGLSISGWCKLPCRALLGPNGRVVSFTGLKNRYPSERDALKL FLYLLSIRQNSLSEVSVSRGKISQTTGLSVYDIDSSIGVLRAIELIEDVKSLGYKMNTSSLPQESDRLAQYLVKGGKSLN LKK
Sequences:
>Translated_243_residues MPTLLWVKMPSDWLGKGILREHFSSRREKDISGEISALKIYICLCLYSDRKMIPYPPILQVHLKVLRERELIGSSLTYDQ LSEYCSLSRVLVSRGLKKLISCGLIHKQGTTRKVVYEIVGLSISGWCKLPCRALLGPNGRVVSFTGLKNRYPSERDALKL FLYLLSIRQNSLSEVSVSRGKISQTTGLSVYDIDSSIGVLRAIELIEDVKSLGYKMNTSSLPQESDRLAQYLVKGGKSLN LKK >Mature_242_residues PTLLWVKMPSDWLGKGILREHFSSRREKDISGEISALKIYICLCLYSDRKMIPYPPILQVHLKVLRERELIGSSLTYDQL SEYCSLSRVLVSRGLKKLISCGLIHKQGTTRKVVYEIVGLSISGWCKLPCRALLGPNGRVVSFTGLKNRYPSERDALKLF LYLLSIRQNSLSEVSVSRGKISQTTGLSVYDIDSSIGVLRAIELIEDVKSLGYKMNTSSLPQESDRLAQYLVKGGKSLNL KK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27328; Mature: 27196
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTLLWVKMPSDWLGKGILREHFSSRREKDISGEISALKIYICLCLYSDRKMIPYPPILQ CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH VHLKVLRERELIGSSLTYDQLSEYCSLSRVLVSRGLKKLISCGLIHKQGTTRKVVYEIVG HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC LSISGWCKLPCRALLGPNGRVVSFTGLKNRYPSERDALKLFLYLLSIRQNSLSEVSVSRG CCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCC KISQTTGLSVYDIDSSIGVLRAIELIEDVKSLGYKMNTSSLPQESDRLAQYLVKGGKSLN CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHCCCCCC LKK CCC >Mature Secondary Structure PTLLWVKMPSDWLGKGILREHFSSRREKDISGEISALKIYICLCLYSDRKMIPYPPILQ CCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH VHLKVLRERELIGSSLTYDQLSEYCSLSRVLVSRGLKKLISCGLIHKQGTTRKVVYEIVG HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC LSISGWCKLPCRALLGPNGRVVSFTGLKNRYPSERDALKLFLYLLSIRQNSLSEVSVSRG CCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCC KISQTTGLSVYDIDSSIGVLRAIELIEDVKSLGYKMNTSSLPQESDRLAQYLVKGGKSLN CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHCCCCCC LKK CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA