| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is spy [H]
Identifier: 120597050
GI number: 120597050
Start: 242361
End: 242852
Strand: Direct
Name: spy [H]
Synonym: Sputw3181_0218
Alternate gene names: 120597050
Gene position: 242361-242852 (Clockwise)
Preceding gene: 120597047
Following gene: 120597051
Centisome position: 5.15
GC content: 41.46
Gene sequence:
>492_bases ATGATGAAAACATTATCTCCTTTGAAAGCAGGTTTATTTGCTATTTTAGCGAGTTCAACCGTATTCGCGACGACGGTCAG TGCAGAGCCAACCCAAGGCTGTGATCATTCAAGGGGTGAGTTCCATAAAAAAGGCAACAGAATGGAACATGGCGGTATGC ATAAAATGTTTGAAGGACTTGATTTAACAGATGCTCAAAAGGCGGATATTAAAAAACTTTTTGCAGAGCAAAAATCGTCT CGTTCAGATGAACGTCCAACGAAAGAAGAGTTGTTAGCACATCGTAATGAGATGCAAGCAGTTATCACCGCAGCCACCTT CGATGAAACTCAAGCTAAAGCATTACTCAATGCTCGGCAAGATAAACGCCAAGCGCAAGCAATTGAACGTATGAAGATTC AGAATCAAATTTATAATCTACTGACGCCAGAGCAACAAGCGAAGTTTAAAGCACGATTTGAAGCACAAGCTGGTAAAGAA CCTCGCGGTTAA
Upstream 100 bases:
>100_bases CCTCGCTTACGTATAGCGCTATAGACTGTGATGGTCGAAAGTGATTCGGCTTGAAAAAGGGTCGTCACTGTGTCTTATCT ATCTAAACATTGAGGTTAAC
Downstream 100 bases:
>100_bases GTGTCTAAGCTGATATACAATAGGGTCATCGCTTCCCGATATAGACCTTTATGACTCAAACTTCCCAATACGATTTTTGG GTCAAATTGGCTAGCCGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MMKTLSPLKAGLFAILASSTVFATTVSAEPTQGCDHSRGEFHKKGNRMEHGGMHKMFEGLDLTDAQKADIKKLFAEQKSS RSDERPTKEELLAHRNEMQAVITAATFDETQAKALLNARQDKRQAQAIERMKIQNQIYNLLTPEQQAKFKARFEAQAGKE PRG
Sequences:
>Translated_163_residues MMKTLSPLKAGLFAILASSTVFATTVSAEPTQGCDHSRGEFHKKGNRMEHGGMHKMFEGLDLTDAQKADIKKLFAEQKSS RSDERPTKEELLAHRNEMQAVITAATFDETQAKALLNARQDKRQAQAIERMKIQNQIYNLLTPEQQAKFKARFEAQAGKE PRG >Mature_163_residues MMKTLSPLKAGLFAILASSTVFATTVSAEPTQGCDHSRGEFHKKGNRMEHGGMHKMFEGLDLTDAQKADIKKLFAEQKSS RSDERPTKEELLAHRNEMQAVITAATFDETQAKALLNARQDKRQAQAIERMKIQNQIYNLLTPEQQAKFKARFEAQAGKE PRG
Specific function: Could be involved in zinc resistance or another aspect of zinc metabolism [H]
COG id: COG3678
COG function: function code UNTP; P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli CpxP [H]
Homologues:
Organism=Escherichia coli, GI1788039, Length=121, Percent_Identity=38.0165289256198, Blast_Score=76, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012899 [H]
Pfam domain/function: PF07813 LTXXQ [H]
EC number: NA
Molecular weight: Translated: 18276; Mature: 18276
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKTLSPLKAGLFAILASSTVFATTVSAEPTQGCDHSRGEFHKKGNRMEHGGMHKMFEGL CCCCHHHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHCCC DLTDAQKADIKKLFAEQKSSRSDERPTKEELLAHRNEMQAVITAATFDETQAKALLNARQ CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKRQAQAIERMKIQNQIYNLLTPEQQAKFKARFEAQAGKEPRG HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MMKTLSPLKAGLFAILASSTVFATTVSAEPTQGCDHSRGEFHKKGNRMEHGGMHKMFEGL CCCCHHHHHHHHHHHHHHCHHHEEECCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHCCC DLTDAQKADIKKLFAEQKSSRSDERPTKEELLAHRNEMQAVITAATFDETQAKALLNARQ CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKRQAQAIERMKIQNQIYNLLTPEQQAKFKARFEAQAGKEPRG HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9068658; 9097039; 9278503; 9694902 [H]