Click here to switch to the map view.

The map label for this gene is yfcH [C]

Identifier: 119947216

GI number: 119947216

Start: 4430084

End: 4430986

Strand: Reverse

Name: yfcH [C]

Synonym: Ping_3614

Alternate gene names: 119947216

Gene position: 4430986-4430084 (Counterclockwise)

Preceding gene: 119947228

Following gene: 119947209

Centisome position: 97.18

GC content: 40.86

Gene sequence:

>903_bases
ATGGATAAGGGTAAAGTGCTGCTAACCGGTTCATCTGGTTTGGTTGGAACGGCTTTAAGTGAGCTTTTGAAATCACAAGG
TTATCAGGTTGGTAGATTATTGCGCAGCGATCAGCCGGGGGAACCCTATTGGGATATTAAGCAGCACTATTTTGCACTTA
AGGATTTTGAAAATCCCGATGTAATTATTCATTTAGCGGGTGAAAATATTGGTGACGGGCGATGGACAAAGGACAAAAAA
AAGAAACTGAGAGACAGTCGTATTCTATCTACCCAATTACTGGTCGAACATTTTAAAAAAGTCCTGCCGCCGCCTAAACT
TTTTATCTGCGCTTCGGCAATCGGTTTTTATGGTAATAGAGGTGATCAAAAGCTTGATGAAAATAGTGCAGCCGGTGCTG
ATTTTGTCAGTCAATTAGCACTTGATTGGGAAGAAAGTAGCCAAGGAATTAAAGAGGCTGGCACTAGGCTGGTTAATCTG
CGCACTGGTATCGTTATCAGTGAAAAAGGCGGTGCATTGGCGAAAATGTTACCAGCTTTTAAACTGGGTTTAGGTGGAAA
AATTGGCTCTGGTGAGCAAATAATGAGTTGGATTGACATTAACGATATGATCCGCGCTATTTTATTTATTATTGAAAATG
AGAATCTTCAAGGCCCGGTAAATTTGGTCTCTCCAAATCCTGTGACTAACCAGATATTTAGCCAACTGCTGGCAAAACAG
TTAAATCGTCCCTGCTTTTTTCCCTTGCCTGAGGGCATGGTTAAATTGCTGTTTGCTGAAATGGGTAAGGAATTATTGCT
TTCAAGTACGCGGGTCAACCCTAAAAAGTTGCTTGATGCTGATTTTGTATTTAAATATGCCAAGTTAGAAGAGAGTTTTC
TCCAGCAGTTTGGGGGTAAATAA

Upstream 100 bases:

>100_bases
ATAATATGTTAAATTAAGTTAAGTTATGTACTCACTCGGTTCGATCTGATTTAATCGAATTGCAAATTGGGATTATATAA
ACGAAGTAATGGGAGTCATT

Downstream 100 bases:

>100_bases
AGGTAAATTGAGGGGGATTAAAGGCAAAGGAAAGGGCAGCCTAAGCTGCCCTTATTTTAGTCACTCTGTCTTATCCATGA
CGGTTGAAGCTTCCTGCTGC

Product: sugar nucleotide epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDKGKVLLTGSSGLVGTALSELLKSQGYQVGRLLRSDQPGEPYWDIKQHYFALKDFENPDVIIHLAGENIGDGRWTKDKK
KKLRDSRILSTQLLVEHFKKVLPPPKLFICASAIGFYGNRGDQKLDENSAAGADFVSQLALDWEESSQGIKEAGTRLVNL
RTGIVISEKGGALAKMLPAFKLGLGGKIGSGEQIMSWIDINDMIRAILFIIENENLQGPVNLVSPNPVTNQIFSQLLAKQ
LNRPCFFPLPEGMVKLLFAEMGKELLLSSTRVNPKKLLDADFVFKYAKLEESFLQQFGGK

Sequences:

>Translated_300_residues
MDKGKVLLTGSSGLVGTALSELLKSQGYQVGRLLRSDQPGEPYWDIKQHYFALKDFENPDVIIHLAGENIGDGRWTKDKK
KKLRDSRILSTQLLVEHFKKVLPPPKLFICASAIGFYGNRGDQKLDENSAAGADFVSQLALDWEESSQGIKEAGTRLVNL
RTGIVISEKGGALAKMLPAFKLGLGGKIGSGEQIMSWIDINDMIRAILFIIENENLQGPVNLVSPNPVTNQIFSQLLAKQ
LNRPCFFPLPEGMVKLLFAEMGKELLLSSTRVNPKKLLDADFVFKYAKLEESFLQQFGGK
>Mature_300_residues
MDKGKVLLTGSSGLVGTALSELLKSQGYQVGRLLRSDQPGEPYWDIKQHYFALKDFENPDVIIHLAGENIGDGRWTKDKK
KKLRDSRILSTQLLVEHFKKVLPPPKLFICASAIGFYGNRGDQKLDENSAAGADFVSQLALDWEESSQGIKEAGTRLVNL
RTGIVISEKGGALAKMLPAFKLGLGGKIGSGEQIMSWIDINDMIRAILFIIENENLQGPVNLVSPNPVTNQIFSQLLAKQ
LNRPCFFPLPEGMVKLLFAEMGKELLLSSTRVNPKKLLDADFVFKYAKLEESFLQQFGGK

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=288, Percent_Identity=34.375, Blast_Score=178, Evalue=6e-45,
Organism=Escherichia coli, GI1788642, Length=293, Percent_Identity=38.2252559726962, Blast_Score=204, Evalue=5e-54,
Organism=Drosophila melanogaster, GI28573846, Length=293, Percent_Identity=32.0819112627986, Blast_Score=150, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 33209; Mature: 33209

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKGKVLLTGSSGLVGTALSELLKSQGYQVGRLLRSDQPGEPYWDIKQHYFALKDFENPD
CCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
VIIHLAGENIGDGRWTKDKKKKLRDSRILSTQLLVEHFKKVLPPPKLFICASAIGFYGNR
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
GDQKLDENSAAGADFVSQLALDWEESSQGIKEAGTRLVNLRTGIVISEKGGALAKMLPAF
CCCCCCCCCCCHHHHHHHHHHCHHHHHCCHHHHCCEEEEEEECEEEECCCCHHHHHHHHH
KLGLGGKIGSGEQIMSWIDINDMIRAILFIIENENLQGPVNLVSPNPVTNQIFSQLLAKQ
HHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
LNRPCFFPLPEGMVKLLFAEMGKELLLSSTRVNPKKLLDADFVFKYAKLEESFLQQFGGK
HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDKGKVLLTGSSGLVGTALSELLKSQGYQVGRLLRSDQPGEPYWDIKQHYFALKDFENPD
CCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
VIIHLAGENIGDGRWTKDKKKKLRDSRILSTQLLVEHFKKVLPPPKLFICASAIGFYGNR
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
GDQKLDENSAAGADFVSQLALDWEESSQGIKEAGTRLVNLRTGIVISEKGGALAKMLPAF
CCCCCCCCCCCHHHHHHHHHHCHHHHHCCHHHHCCEEEEEEECEEEECCCCHHHHHHHHH
KLGLGGKIGSGEQIMSWIDINDMIRAILFIIENENLQGPVNLVSPNPVTNQIFSQLLAKQ
HHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
LNRPCFFPLPEGMVKLLFAEMGKELLLSSTRVNPKKLLDADFVFKYAKLEESFLQQFGGK
HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]