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The map label for this gene is dcyD [C]

Identifier: 119946652

GI number: 119946652

Start: 3728570

End: 3729580

Strand: Direct

Name: dcyD [C]

Synonym: Ping_3031

Alternate gene names: 119946652

Gene position: 3728570-3729580 (Clockwise)

Preceding gene: 119946651

Following gene: 119946653

Centisome position: 81.77

GC content: 42.33

Gene sequence:

>1011_bases
TTGCACCCACCACAGAATCAATCTCAAGATCAAGCAAGCAATGGCTTACAACAACTTGAAAAAAAAATGCAAAGCATTAT
TGCCCCCTCCCCATTGCAGAAAATTGAACATCCTTTATTAGATTTTTGGCAGTTAACCCTGTCGGTTAAAAGAGATGATC
TTTTACATCCGGCAATATCTGGGAATAAATGGCGGAAATTAAAGTACAACTTATTGGAGGCGCGCAGACAACAAGTTGAT
CATATTATTAGTTTTGGCGGTGCTTATTCAAACCATATTCATGCACTTGCTGCTGCAGGATTTTATTTTGGTTTTAAAAC
CACTGCCATTATCCGTGGAGAGAGTTGGTATGCAAATAACCCCACACTAAAACAAGCCTTAGCATGGGGAATGGAGTTAC
AATTTGTGACTCGCCAGGAATATAAACAAAGAGCAGAGCCTGCCTACCTGCAATCTTTACAGAGCGCCTATCCGAACGCT
TTTATTGTGCCCGAAGGGGGCAGCAACCGATTTGCCCTACGCGGGGTAATAGAAGCGCTACAGGAAATTCAACAACAAGC
AAGTGTTACTGTTGATCATATTATAACGGCCACCGGCAGTGGCAGTACGTTAGCAGGACTGGTTGCAGGCATAGCACAAT
CGCAACGACAACCGAAAGTAACAGGTATTGCCGTGTTAAAAAATGCACACTATCTTAATCAAGAAATAGCCTTACTATTG
CAACAGGCCAAGATCAACAATAAGAATAACTGGCGCTTACAAACAGAATTTCACCATGGGGGTTATGCCAAAGTACCGCT
TGAATTAAACCATTTTTGTGAGCAGTTTAGCCTGCAAACGGGCATTCCCGTTGAACCTATTTACACAGGCAAAATGTTTT
ATGGCTTATTTAAACTTATCGAACAAGGCTATTTTAACCGAGGCGAACATATCGTTGCCCTGCACACTGGCGGTCTGCAG
GGGTTAGACGGATTAAAAGAGAACAGGAAAGAGAGAACAGATCTGACTTAA

Upstream 100 bases:

>100_bases
AAAAGCGCATTGAATGCGCTTTTCCTGTTATATACGGCGCCTTTTTATCACCTTCCGCGTAAGACAACAATATACCGCCA
TTTATTGAGGCAAGAAAATA

Downstream 100 bases:

>100_bases
GTGTAACCCGCTAGATTTTAATTTAATTTGGATATATAAAGAGCCGCTACAGGTGTTTGTAGAGCAGGCCTGTTGGGATA
ATTTTAGCGGTTATAATTCT

Product: pyridoxal-5'-phosphate-dependent enzyme, beta subunit

Products: NA

Alternate protein names: ACC deaminase [H]

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MHPPQNQSQDQASNGLQQLEKKMQSIIAPSPLQKIEHPLLDFWQLTLSVKRDDLLHPAISGNKWRKLKYNLLEARRQQVD
HIISFGGAYSNHIHALAAAGFYFGFKTTAIIRGESWYANNPTLKQALAWGMELQFVTRQEYKQRAEPAYLQSLQSAYPNA
FIVPEGGSNRFALRGVIEALQEIQQQASVTVDHIITATGSGSTLAGLVAGIAQSQRQPKVTGIAVLKNAHYLNQEIALLL
QQAKINNKNNWRLQTEFHHGGYAKVPLELNHFCEQFSLQTGIPVEPIYTGKMFYGLFKLIEQGYFNRGEHIVALHTGGLQ
GLDGLKENRKERTDLT

Sequences:

>Translated_336_residues
MHPPQNQSQDQASNGLQQLEKKMQSIIAPSPLQKIEHPLLDFWQLTLSVKRDDLLHPAISGNKWRKLKYNLLEARRQQVD
HIISFGGAYSNHIHALAAAGFYFGFKTTAIIRGESWYANNPTLKQALAWGMELQFVTRQEYKQRAEPAYLQSLQSAYPNA
FIVPEGGSNRFALRGVIEALQEIQQQASVTVDHIITATGSGSTLAGLVAGIAQSQRQPKVTGIAVLKNAHYLNQEIALLL
QQAKINNKNNWRLQTEFHHGGYAKVPLELNHFCEQFSLQTGIPVEPIYTGKMFYGLFKLIEQGYFNRGEHIVALHTGGLQ
GLDGLKENRKERTDLT
>Mature_336_residues
MHPPQNQSQDQASNGLQQLEKKMQSIIAPSPLQKIEHPLLDFWQLTLSVKRDDLLHPAISGNKWRKLKYNLLEARRQQVD
HIISFGGAYSNHIHALAAAGFYFGFKTTAIIRGESWYANNPTLKQALAWGMELQFVTRQEYKQRAEPAYLQSLQSAYPNA
FIVPEGGSNRFALRGVIEALQEIQQQASVTVDHIITATGSGSTLAGLVAGIAQSQRQPKVTGIAVLKNAHYLNQEIALLL
QQAKINNKNNWRLQTEFHHGGYAKVPLELNHFCEQFSLQTGIPVEPIYTGKMFYGLFKLIEQGYFNRGEHIVALHTGGLQ
GLDGLKENRKERTDLT

Specific function: Catalyzes The Alpha,Beta-Elimination Reaction Of D-Cysteine And Of Several D-Cysteine Derivatives. It Could Be A Defense Mechanism Against D-Cysteine. Can Also Catalyze The Degradation Of 3-Chloro-D-Alanine. [C]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=317, Percent_Identity=27.7602523659306, Blast_Score=107, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =3.5.99.7 [H]

Molecular weight: Translated: 37738; Mature: 37738

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPPQNQSQDQASNGLQQLEKKMQSIIAPSPLQKIEHPLLDFWQLTLSVKRDDLLHPAIS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCC
GNKWRKLKYNLLEARRQQVDHIISFGGAYSNHIHALAAAGFYFGFKTTAIIRGESWYANN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC
PTLKQALAWGMELQFVTRQEYKQRAEPAYLQSLQSAYPNAFIVPEGGSNRFALRGVIEAL
CHHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
QEIQQQASVTVDHIITATGSGSTLAGLVAGIAQSQRQPKVTGIAVLKNAHYLNQEIALLL
HHHHHHHCCCHHHEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QQAKINNKNNWRLQTEFHHGGYAKVPLELNHFCEQFSLQTGIPVEPIYTGKMFYGLFKLI
HHHHCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHH
EQGYFNRGEHIVALHTGGLQGLDGLKENRKERTDLT
HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MHPPQNQSQDQASNGLQQLEKKMQSIIAPSPLQKIEHPLLDFWQLTLSVKRDDLLHPAIS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCC
GNKWRKLKYNLLEARRQQVDHIISFGGAYSNHIHALAAAGFYFGFKTTAIIRGESWYANN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC
PTLKQALAWGMELQFVTRQEYKQRAEPAYLQSLQSAYPNAFIVPEGGSNRFALRGVIEAL
CHHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
QEIQQQASVTVDHIITATGSGSTLAGLVAGIAQSQRQPKVTGIAVLKNAHYLNQEIALLL
HHHHHHHCCCHHHEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QQAKINNKNNWRLQTEFHHGGYAKVPLELNHFCEQFSLQTGIPVEPIYTGKMFYGLFKLI
HHHHCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHH
EQGYFNRGEHIVALHTGGLQGLDGLKENRKERTDLT
HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA