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The map label for this gene is cycH [H]

Identifier: 119946637

GI number: 119946637

Start: 3715925

End: 3717211

Strand: Reverse

Name: cycH [H]

Synonym: Ping_3016

Alternate gene names: 119946637

Gene position: 3717211-3715925 (Counterclockwise)

Preceding gene: 119946638

Following gene: 119946636

Centisome position: 81.52

GC content: 42.27

Gene sequence:

>1287_bases
ATGATTTTACAGTTTTGGTTGACCAGTATTTTGCTTGTAATAATCGCAAGTGCTCTGCTGACGATCCCTTTTATACGCAG
CTATAAAAATCGCCAGCAAGGGGAGCGCCGTAATCAATTAAATCGCGCATTATATGATATTCGTTTAACTGAACTTGAAA
ACGATGAAGCACAGGATCTTATTGTTGATAAAGAAACCTTCCGCACTGAATTGCAACATAATTTGCTCGATGATGTGATT
GATAAAGAGACACCTGATAATTATAAAAACAGTAAAATGTTGTGGCTGCCAGCGGTTCTTATTCTGGTTTTTGGCAGTTA
TGGACTGTATAGCTCCGTGGGTGCCTATCAAGAGGTTGAGCAGTGGCAATCGGTTATGGAGCGCTACCCGGACCTGCAAA
ATAAACTCTTTAATGATCAAGATAGCAGTCCAAGTGAGCAGGAACTGCGCGATTTAATGCTAGGTTTACGCACCCAACTA
AGTCAAAACAGCAATAATGCCGATGGCTGGTTATTATATAGCCGCTTAGCAATGGTCTTTAAGGAGACCGAGGTTGCCTT
AGATGCGATTAAAAAAGCGTTATTGCTCGATCCTAAGTCACTCAATATACGCCTTGTTGATATCCAGTTGAAAATGCAGA
CGGGTGATGCCGGCATCCAAAATCAAGCGGAATCGTTATTAACAGAGCTGTTAAGGGAGTATCCCAATGAGCTGCAAGCA
TGGTCTATGTACGCATTTATAGCACTTGAAAAGAAGGATTATGCGTTGGCCATCCAACGTTGGGAAAAAATGCAAACGCT
GGTTGAGAATGATTCACCACAGGCAGAGACCCTGCGTGACAGCATTGGCTACGCAAAACAGCAAATGTCTAAAGATGCTG
GTAGTGTTATTGATAATGCCACTCCTAATCTCAATAACAGCATTGACAATCTGCCTGCTGCCATTGGGGTGACTTATCGG
GTGGAGATTTCTGTTGATGATAATGTTGTTGTGCCAAAAGATGGCTTTTTATTTGTTTATGCTCAAGCCGTTGGCGGCCC
GCCAATGCCGATTGCAGCGCTCAAAATAAAACTACCCACTTTTCCTGCAACCATTGAGCTTTCTGATGCTAATTCTATGG
TGAAGGGGGTAAAACTAAGTGATTATCCTAATTTCATTATTAAAGCACGTATTTCAGTTGATGGTAATGCAAGCAATAGT
GCCGGACAGTGGCAAGGTGAAAGTCCTGCGATTGCCGCCGGAGAAAAACAAAATGTAAAAGTGCTTGTTTCACAACTGCT
AGAGTAA

Upstream 100 bases:

>100_bases
AACAGGCGCCACAGTTAGATCCTGACGAAGAACAGCGTTTGCAAAAAATTCTGGGTGATAAAAAACCCACAGATAAAAAG
TCACAAAAAGGGAATAAGCA

Downstream 100 bases:

>100_bases
ATTTTTATTCAATTTAAAAAGTATAACGATTTAAATTTTGAATCGTTATACCTAATGCCGTGAGTTTTTTAACAACTAAG
ACCGATCACTTTTTCTTGGT

Product: cytochrome c-type biogenesis protein CcmI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MILQFWLTSILLVIIASALLTIPFIRSYKNRQQGERRNQLNRALYDIRLTELENDEAQDLIVDKETFRTELQHNLLDDVI
DKETPDNYKNSKMLWLPAVLILVFGSYGLYSSVGAYQEVEQWQSVMERYPDLQNKLFNDQDSSPSEQELRDLMLGLRTQL
SQNSNNADGWLLYSRLAMVFKETEVALDAIKKALLLDPKSLNIRLVDIQLKMQTGDAGIQNQAESLLTELLREYPNELQA
WSMYAFIALEKKDYALAIQRWEKMQTLVENDSPQAETLRDSIGYAKQQMSKDAGSVIDNATPNLNNSIDNLPAAIGVTYR
VEISVDDNVVVPKDGFLFVYAQAVGGPPMPIAALKIKLPTFPATIELSDANSMVKGVKLSDYPNFIIKARISVDGNASNS
AGQWQGESPAIAAGEKQNVKVLVSQLLE

Sequences:

>Translated_428_residues
MILQFWLTSILLVIIASALLTIPFIRSYKNRQQGERRNQLNRALYDIRLTELENDEAQDLIVDKETFRTELQHNLLDDVI
DKETPDNYKNSKMLWLPAVLILVFGSYGLYSSVGAYQEVEQWQSVMERYPDLQNKLFNDQDSSPSEQELRDLMLGLRTQL
SQNSNNADGWLLYSRLAMVFKETEVALDAIKKALLLDPKSLNIRLVDIQLKMQTGDAGIQNQAESLLTELLREYPNELQA
WSMYAFIALEKKDYALAIQRWEKMQTLVENDSPQAETLRDSIGYAKQQMSKDAGSVIDNATPNLNNSIDNLPAAIGVTYR
VEISVDDNVVVPKDGFLFVYAQAVGGPPMPIAALKIKLPTFPATIELSDANSMVKGVKLSDYPNFIIKARISVDGNASNS
AGQWQGESPAIAAGEKQNVKVLVSQLLE
>Mature_428_residues
MILQFWLTSILLVIIASALLTIPFIRSYKNRQQGERRNQLNRALYDIRLTELENDEAQDLIVDKETFRTELQHNLLDDVI
DKETPDNYKNSKMLWLPAVLILVFGSYGLYSSVGAYQEVEQWQSVMERYPDLQNKLFNDQDSSPSEQELRDLMLGLRTQL
SQNSNNADGWLLYSRLAMVFKETEVALDAIKKALLLDPKSLNIRLVDIQLKMQTGDAGIQNQAESLLTELLREYPNELQA
WSMYAFIALEKKDYALAIQRWEKMQTLVENDSPQAETLRDSIGYAKQQMSKDAGSVIDNATPNLNNSIDNLPAAIGVTYR
VEISVDDNVVVPKDGFLFVYAQAVGGPPMPIAALKIKLPTFPATIELSDANSMVKGVKLSDYPNFIIKARISVDGNASNS
AGQWQGESPAIAAGEKQNVKVLVSQLLE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=210, Percent_Identity=27.1428571428571, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48097; Mature: 48097

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILQFWLTSILLVIIASALLTIPFIRSYKNRQQGERRNQLNRALYDIRLTELENDEAQDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHH
IVDKETFRTELQHNLLDDVIDKETPDNYKNSKMLWLPAVLILVFGSYGLYSSVGAYQEVE
EECHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
QWQSVMERYPDLQNKLFNDQDSSPSEQELRDLMLGLRTQLSQNSNNADGWLLYSRLAMVF
HHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KETEVALDAIKKALLLDPKSLNIRLVDIQLKMQTGDAGIQNQAESLLTELLREYPNELQA
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHH
WSMYAFIALEKKDYALAIQRWEKMQTLVENDSPQAETLRDSIGYAKQQMSKDAGSVIDNA
HHEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TPNLNNSIDNLPAAIGVTYRVEISVDDNVVVPKDGFLFVYAQAVGGPPMPIAALKIKLPT
CCCCCCCHHCCCHHEEEEEEEEEEECCCEEECCCCEEEEEEECCCCCCCCEEEEEEECCC
FPATIELSDANSMVKGVKLSDYPNFIIKARISVDGNASNSAGQWQGESPAIAAGEKQNVK
CCCEEEECCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCHHH
VLVSQLLE
HHHHHHCC
>Mature Secondary Structure
MILQFWLTSILLVIIASALLTIPFIRSYKNRQQGERRNQLNRALYDIRLTELENDEAQDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHH
IVDKETFRTELQHNLLDDVIDKETPDNYKNSKMLWLPAVLILVFGSYGLYSSVGAYQEVE
EECHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
QWQSVMERYPDLQNKLFNDQDSSPSEQELRDLMLGLRTQLSQNSNNADGWLLYSRLAMVF
HHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KETEVALDAIKKALLLDPKSLNIRLVDIQLKMQTGDAGIQNQAESLLTELLREYPNELQA
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHH
WSMYAFIALEKKDYALAIQRWEKMQTLVENDSPQAETLRDSIGYAKQQMSKDAGSVIDNA
HHEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TPNLNNSIDNLPAAIGVTYRVEISVDDNVVVPKDGFLFVYAQAVGGPPMPIAALKIKLPT
CCCCCCCHHCCCHHEEEEEEEEEEECCCEEECCCCEEEEEEECCCCCCCCEEEEEEECCC
FPATIELSDANSMVKGVKLSDYPNFIIKARISVDGNASNSAGQWQGESPAIAAGEKQNVK
CCCEEEECCCHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCHHH
VLVSQLLE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]