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The map label for this gene is ccmH [H]

Identifier: 119946638

GI number: 119946638

Start: 3717208

End: 3717750

Strand: Reverse

Name: ccmH [H]

Synonym: Ping_3017

Alternate gene names: 119946638

Gene position: 3717750-3717208 (Counterclockwise)

Preceding gene: 119946639

Following gene: 119946637

Centisome position: 81.54

GC content: 37.75

Gene sequence:

>543_bases
ATGCAATTGACTTCAGTAGATCTACATGTTCAAAATAATCGCTTTAAAACAGTTAATTTCAGCGCTTATCTGTTTTGTCT
CATGTTTTTTTTCAGCCCTTTAGCTTTTAGTGCGACTGATCTTTTTGAGTTTGATAATGCACAACAAGAACAGACTTTTC
ATGACTTAACAAAGCAGTTACGTTGCCCTAAATGTCAGAATCAGAATATTGCCGATTCTAATGCAGAGCTCGCGGAAGAT
TTACGCAACAAAACCTATGAACTGGTGAAAGAAGGCAAAAATGAAGAGCAAGTTATTGCCTATATGGTTGCCCGTTACGG
TAACTTTATACGTTATGATCCGCCGATGACACCTGCGACTATTTTCCTGTGGCTTGGTCCTTTGTTGTTTATTTTGGTAG
GGTTCTACTTTATATATGCTCTGGTAAAACGACAAAAAAAACAGGCGCCACAGTTAGATCCTGACGAAGAACAGCGTTTG
CAAAAAATTCTGGGTGATAAAAAACCCACAGATAAAAAGTCACAAAAAGGGAATAAGCAATGA

Upstream 100 bases:

>100_bases
TGATAGCAAAGGTATCATCCAGTATCGCCATGTCGGGGATTTAAATGACCGCAATTGGCAAGATAAATTATCTGCTATCT
TTGATAATATGGAGTAACCG

Downstream 100 bases:

>100_bases
TTTTACAGTTTTGGTTGACCAGTATTTTGCTTGTAATAATCGCAAGTGCTCTGCTGACGATCCCTTTTATACGCAGCTAT
AAAAATCGCCAGCAAGGGGA

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MQLTSVDLHVQNNRFKTVNFSAYLFCLMFFFSPLAFSATDLFEFDNAQQEQTFHDLTKQLRCPKCQNQNIADSNAELAED
LRNKTYELVKEGKNEEQVIAYMVARYGNFIRYDPPMTPATIFLWLGPLLFILVGFYFIYALVKRQKKQAPQLDPDEEQRL
QKILGDKKPTDKKSQKGNKQ

Sequences:

>Translated_180_residues
MQLTSVDLHVQNNRFKTVNFSAYLFCLMFFFSPLAFSATDLFEFDNAQQEQTFHDLTKQLRCPKCQNQNIADSNAELAED
LRNKTYELVKEGKNEEQVIAYMVARYGNFIRYDPPMTPATIFLWLGPLLFILVGFYFIYALVKRQKKQAPQLDPDEEQRL
QKILGDKKPTDKKSQKGNKQ
>Mature_180_residues
MQLTSVDLHVQNNRFKTVNFSAYLFCLMFFFSPLAFSATDLFEFDNAQQEQTFHDLTKQLRCPKCQNQNIADSNAELAED
LRNKTYELVKEGKNEEQVIAYMVARYGNFIRYDPPMTPATIFLWLGPLLFILVGFYFIYALVKRQKKQAPQLDPDEEQRL
QKILGDKKPTDKKSQKGNKQ

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=133, Percent_Identity=48.1203007518797, Blast_Score=147, Evalue=4e-37,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=48.780487804878, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 21019; Mature: 21019

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTSVDLHVQNNRFKTVNFSAYLFCLMFFFSPLAFSATDLFEFDNAQQEQTFHDLTKQL
CCCCEEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RCPKCQNQNIADSNAELAEDLRNKTYELVKEGKNEEQVIAYMVARYGNFIRYDPPMTPAT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCHHH
IFLWLGPLLFILVGFYFIYALVKRQKKQAPQLDPDEEQRLQKILGDKKPTDKKSQKGNKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQLTSVDLHVQNNRFKTVNFSAYLFCLMFFFSPLAFSATDLFEFDNAQQEQTFHDLTKQL
CCCCEEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RCPKCQNQNIADSNAELAEDLRNKTYELVKEGKNEEQVIAYMVARYGNFIRYDPPMTPAT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCHHH
IFLWLGPLLFILVGFYFIYALVKRQKKQAPQLDPDEEQRLQKILGDKKPTDKKSQKGNKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]