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The map label for this gene is crl [H]

Identifier: 119946575

GI number: 119946575

Start: 3641556

End: 3641948

Strand: Reverse

Name: crl [H]

Synonym: Ping_2954

Alternate gene names: 119946575

Gene position: 3641948-3641556 (Counterclockwise)

Preceding gene: 119946576

Following gene: 119946574

Centisome position: 79.87

GC content: 37.66

Gene sequence:

>393_bases
ATGACCATGGACGTAAAAAAATCACCATCCCACGGACGAATCACCAAATTACTCACTGATTTGGGGCCTTATTTTCGTCG
CCTGAATTCAACGGAATCATCCTATTTTTTTGATTGTTTAGAAATCTGTGTGGATGATCAAAAAGAGCCAGAAGAAAGGG
AGTTTTTAGGCTGGTGGATGATTGTTAAAAAACAGGAGGATAGTTTTGAATATGAACGCTTTAACGGCCGTTATAACCTG
CCGGGAAATTGGGTAGATGAAACTATTTATAAAAAAAATCAGCAACAACTTGATAACTCTTTTGAGTTGTTTTTAGCGCG
ATTAGAAACATTACTTGAAGTTGAAACTGAATTACCGTTAAATCTGCGGGAAGTGGTCTGCAGCGAAGTATAA

Upstream 100 bases:

>100_bases
ATATTTAAAATCTTTAAGTTATTCTGCTGAATGGTTAACAATACATCTTGCTGAGTAGGTGTATGGTAGTAAAATATTTA
TCAAAAAAAAGGATATTATT

Downstream 100 bases:

>100_bases
AACAGAGTCATAAGATCAGCGCTATTGAAAACGCAGATTTACTATATTAAATTGAATAATGTTATAGTCACAAACAGTAA
CGAGTCGCTTGTTGCTGTTT

Product: DNA-binding transcriptional regulator Crl

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MTMDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWMIVKKQEDSFEYERFNGRYNL
PGNWVDETIYKKNQQQLDNSFELFLARLETLLEVETELPLNLREVVCSEV

Sequences:

>Translated_130_residues
MTMDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWMIVKKQEDSFEYERFNGRYNL
PGNWVDETIYKKNQQQLDNSFELFLARLETLLEVETELPLNLREVVCSEV
>Mature_129_residues
TMDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWMIVKKQEDSFEYERFNGRYNLP
GNWVDETIYKKNQQQLDNSFELFLARLETLLEVETELPLNLREVVCSEV

Specific function: Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the crl family [H]

Homologues:

Organism=Escherichia coli, GI1786435, Length=111, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009986 [H]

Pfam domain/function: PF07417 Crl [H]

EC number: NA

Molecular weight: Translated: 15543; Mature: 15412

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IVKKQEDSFEYERFNGRYNLPGNWVDETIYKKNQQQLDNSFELFLARLETLLEVETELPL
EEECCCCCCHHHHCCCEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLREVVCSEV
CHHHHHHHCC
>Mature Secondary Structure 
TMDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWM
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IVKKQEDSFEYERFNGRYNLPGNWVDETIYKKNQQQLDNSFELFLARLETLLEVETELPL
EEECCCCCCHHHHCCCEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLREVVCSEV
CHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA