| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is frsA [C]
Identifier: 119946576
GI number: 119946576
Start: 3641991
End: 3643250
Strand: Reverse
Name: frsA [C]
Synonym: Ping_2955
Alternate gene names: 119946576
Gene position: 3643250-3641991 (Counterclockwise)
Preceding gene: 119946577
Following gene: 119946575
Centisome position: 79.9
GC content: 38.73
Gene sequence:
>1260_bases ATGTCTGAAAATTTATCTGAAACGCTGTTTGTACATAAATCTAATGTACAAGAAACATCAACTATTGTTGCTAACTCTGC AACGAAAAAAAACCATAAACAAAATAATGTTGTTATGGAGGGAGAAGAAAAACCGGGTTGGTATCGTTTATTAAAGTTTA TGCTGTGGTCTTGGCAAGGTTTAGACCTTATTGAGTGTTCCGAGGTGCTCGCCCGTATTGCTGTGTCAACACATCCCCGC AGTGATCAAGAGTTATTAGATAGCGTAATAGGTTTTCATTCGGGAAATTGGAGCTATGAGTGGACGCAGAAAGCTATGTT TTATTACAAACAAGGTAAAGCATATGCTCAGCAGGGTGAGCCTGAAAAGGCCAAAAAAGCGTATTATTTAGCGTCACAAT TTTATAGTGTTGCCAGTTACCCACACTTAAAAGGAGATGAATTAAGCCTCCAGGCTCAAGCGTTAGCATTTAATAATTAT AAAGAGTCAGCAAAATATAATCATAATATGATTTTAAAAGAGATTAAAGTGCCATTCCAAGGTAAAGAGGTCACTTGTTA TTTGCATCTTCCAAATGATGAAACGATTCATCCTGTGGTGATTATTAGTGGTGGACTCGATACCCTGCAGTGTGAATTAT TACCCCTGTTTGAAAAGGAGCTTGCCCCGGCAGGCATTGCGATGCTAACCGTCGACTTACCCGGCATTGGTTTTGCCTCG CATGTCAAACTGGATCAAAACTCATCCAATTTACATCAGGCCATTTGCCATTTTTTAAAAGGAGTACCTTGGGTTGATCA TGATCGTATTGCGTTGATGGGAATGCGCTTTGGCGGTAATGTGGCTGCTCGTTTAGCCTTTTTAGAGCCTAACTGTGTTA AATCTGTTGTCTGTGTAGGTGCTGCTGTGGGCAGTATCTTTGATAATTTAGATAATTTTAAAAAATTACCGCCGATGCTA TTAGATTGCATTGCATCACGTATGCAGATTAATAATTCCAGCGTTGAGATGTTGTATAAGTTTTGTGTGCCCCTTTCACT TATTAAACAGGGATTGCTTGCTCGGACGCGCATCAAAACCCCTTTATTAAGTATTGGGCACAAAGATGATTTAATTTGCA ACGAGCAAGATTTAAAGTTGATTGCCCGTGCCAGTCGTGAAGGAGAATCACATATTATTGATAAACCTCCCATATTTGAA TCATATTTAAAATCTTTAAGTTATTCTGCTGAATGGTTAACAATACATCTTGCTGAGTAG
Upstream 100 bases:
>100_bases TATTATTATGACTCTTTTTTATCAGCGCTCATTTTCAGTAACATTTATCCCTGATTTTACTTTATTCCTAATCTAACGCC ATTTTCAAAACGAGTGTTCT
Downstream 100 bases:
>100_bases GTGTATGGTAGTAAAATATTTATCAAAAAAAAGGATATTATTATGACCATGGACGTAAAAAAATCACCATCCCACGGACG AATCACCAAATTACTCACTG
Product: fermentation/respiration switch protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MSENLSETLFVHKSNVQETSTIVANSATKKNHKQNNVVMEGEEKPGWYRLLKFMLWSWQGLDLIECSEVLARIAVSTHPR SDQELLDSVIGFHSGNWSYEWTQKAMFYYKQGKAYAQQGEPEKAKKAYYLASQFYSVASYPHLKGDELSLQAQALAFNNY KESAKYNHNMILKEIKVPFQGKEVTCYLHLPNDETIHPVVIISGGLDTLQCELLPLFEKELAPAGIAMLTVDLPGIGFAS HVKLDQNSSNLHQAICHFLKGVPWVDHDRIALMGMRFGGNVAARLAFLEPNCVKSVVCVGAAVGSIFDNLDNFKKLPPML LDCIASRMQINNSSVEMLYKFCVPLSLIKQGLLARTRIKTPLLSIGHKDDLICNEQDLKLIARASREGESHIIDKPPIFE SYLKSLSYSAEWLTIHLAE
Sequences:
>Translated_419_residues MSENLSETLFVHKSNVQETSTIVANSATKKNHKQNNVVMEGEEKPGWYRLLKFMLWSWQGLDLIECSEVLARIAVSTHPR SDQELLDSVIGFHSGNWSYEWTQKAMFYYKQGKAYAQQGEPEKAKKAYYLASQFYSVASYPHLKGDELSLQAQALAFNNY KESAKYNHNMILKEIKVPFQGKEVTCYLHLPNDETIHPVVIISGGLDTLQCELLPLFEKELAPAGIAMLTVDLPGIGFAS HVKLDQNSSNLHQAICHFLKGVPWVDHDRIALMGMRFGGNVAARLAFLEPNCVKSVVCVGAAVGSIFDNLDNFKKLPPML LDCIASRMQINNSSVEMLYKFCVPLSLIKQGLLARTRIKTPLLSIGHKDDLICNEQDLKLIARASREGESHIIDKPPIFE SYLKSLSYSAEWLTIHLAE >Mature_418_residues SENLSETLFVHKSNVQETSTIVANSATKKNHKQNNVVMEGEEKPGWYRLLKFMLWSWQGLDLIECSEVLARIAVSTHPRS DQELLDSVIGFHSGNWSYEWTQKAMFYYKQGKAYAQQGEPEKAKKAYYLASQFYSVASYPHLKGDELSLQAQALAFNNYK ESAKYNHNMILKEIKVPFQGKEVTCYLHLPNDETIHPVVIISGGLDTLQCELLPLFEKELAPAGIAMLTVDLPGIGFASH VKLDQNSSNLHQAICHFLKGVPWVDHDRIALMGMRFGGNVAARLAFLEPNCVKSVVCVGAAVGSIFDNLDNFKKLPPMLL DCIASRMQINNSSVEMLYKFCVPLSLIKQGLLARTRIKTPLLSIGHKDDLICNEQDLKLIARASREGESHIIDKPPIFES YLKSLSYSAEWLTIHLAE
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0255 family [H]
Homologues:
Organism=Escherichia coli, GI1786434, Length=418, Percent_Identity=40.6698564593301, Blast_Score=305, Evalue=4e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010520 [H]
Pfam domain/function: PF06500 DUF1100 [H]
EC number: NA
Molecular weight: Translated: 47094; Mature: 46963
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSENLSETLFVHKSNVQETSTIVANSATKKNHKQNNVVMEGEEKPGWYRLLKFMLWSWQG CCCCCCCEEEEECCCCCHHHHHHCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCCC LDLIECSEVLARIAVSTHPRSDQELLDSVIGFHSGNWSYEWTQKAMFYYKQGKAYAQQGE CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHCCC PEKAKKAYYLASQFYSVASYPHLKGDELSLQAQALAFNNYKESAKYNHNMILKEIKVPFQ CHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHCCHHHHHCCCCCEEEEECCCCCC GKEVTCYLHLPNDETIHPVVIISGGLDTLQCELLPLFEKELAPAGIAMLTVDLPGIGFAS CCEEEEEEECCCCCCCCEEEEEECCCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCCHH HVKLDQNSSNLHQAICHFLKGVPWVDHDRIALMGMRFGGNVAARLAFLEPNCVKSVVCVG EEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHH AAVGSIFDNLDNFKKLPPMLLDCIASRMQINNSSVEMLYKFCVPLSLIKQGLLARTRIKT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PLLSIGHKDDLICNEQDLKLIARASREGESHIIDKPPIFESYLKSLSYSAEWLTIHLAE HHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECC >Mature Secondary Structure SENLSETLFVHKSNVQETSTIVANSATKKNHKQNNVVMEGEEKPGWYRLLKFMLWSWQG CCCCCCEEEEECCCCCHHHHHHCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCCC LDLIECSEVLARIAVSTHPRSDQELLDSVIGFHSGNWSYEWTQKAMFYYKQGKAYAQQGE CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHCCC PEKAKKAYYLASQFYSVASYPHLKGDELSLQAQALAFNNYKESAKYNHNMILKEIKVPFQ CHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHCCHHHHHCCCCCEEEEECCCCCC GKEVTCYLHLPNDETIHPVVIISGGLDTLQCELLPLFEKELAPAGIAMLTVDLPGIGFAS CCEEEEEEECCCCCCCCEEEEEECCCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCCHH HVKLDQNSSNLHQAICHFLKGVPWVDHDRIALMGMRFGGNVAARLAFLEPNCVKSVVCVG EEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHH AAVGSIFDNLDNFKKLPPMLLDCIASRMQINNSSVEMLYKFCVPLSLIKQGLLARTRIKT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PLLSIGHKDDLICNEQDLKLIARASREGESHIIDKPPIFESYLKSLSYSAEWLTIHLAE HHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA