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The map label for this gene is yoaB [C]

Identifier: 119946281

GI number: 119946281

Start: 3246284

End: 3246634

Strand: Direct

Name: yoaB [C]

Synonym: Ping_2646

Alternate gene names: 119946281

Gene position: 3246284-3246634 (Clockwise)

Preceding gene: 119946280

Following gene: 119946282

Centisome position: 71.2

GC content: 45.3

Gene sequence:

>351_bases
ATGATAGAGCGTAAAGAAACAAAACAGCGTATGAGCAGAATAGTAAAAAACAACGGCACAATTTACCTGTGCGGCCAAGT
CGGTGCAGATGCAACTAAAGACATTACCGAGCAAACCCAAACAATGTTAGACAAAGTAGATGCACTACTTTTGGATGCAG
GCAGTGACCGTGAACATATGCTAACAGCCACCATTTATGTTAAGGATATGGCTGAACATTTCGCCCCTATGAATGCTGTC
TGGGATGCATGGCTTCCAGAGGGATGTGCACCGGCAAGAGCCTGCGTACAAGCTAGCATGGCCCGTGAAGCACTACTAGT
TGAAATTTCGGTGATAGCCGCAGAAAAATAA

Upstream 100 bases:

>100_bases
GTACTTAGCTTATTAGTTTATTAGTTTATTAGTTTATTGGCTTATGCTCCAAGTTGTTTATAATGCCTGCCACTATAGAC
ACCCACAATCAAGGATTAGC

Downstream 100 bases:

>100_bases
TTTAGACATTTAGACATTTAGGCTGAAAGCTGAAGGCAGGGAAGCAGGAAGGCTAGAGAGCTAGATGGCTAGAAGGCTAG
AAGACCGACGCTCAAAGCTC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MIERKETKQRMSRIVKNNGTIYLCGQVGADATKDITEQTQTMLDKVDALLLDAGSDREHMLTATIYVKDMAEHFAPMNAV
WDAWLPEGCAPARACVQASMAREALLVEISVIAAEK

Sequences:

>Translated_116_residues
MIERKETKQRMSRIVKNNGTIYLCGQVGADATKDITEQTQTMLDKVDALLLDAGSDREHMLTATIYVKDMAEHFAPMNAV
WDAWLPEGCAPARACVQASMAREALLVEISVIAAEK
>Mature_116_residues
MIERKETKQRMSRIVKNNGTIYLCGQVGADATKDITEQTQTMLDKVDALLLDAGSDREHMLTATIYVKDMAEHFAPMNAV
WDAWLPEGCAPARACVQASMAREALLVEISVIAAEK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=113, Percent_Identity=39.8230088495575, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12812; Mature: 12812

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERKETKQRMSRIVKNNGTIYLCGQVGADATKDITEQTQTMLDKVDALLLDAGSDREHM
CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LTATIYVKDMAEHFAPMNAVWDAWLPEGCAPARACVQASMAREALLVEISVIAAEK
EHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MIERKETKQRMSRIVKNNGTIYLCGQVGADATKDITEQTQTMLDKVDALLLDAGSDREHM
CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LTATIYVKDMAEHFAPMNAVWDAWLPEGCAPARACVQASMAREALLVEISVIAAEK
EHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA