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The map label for this gene is ddpB [H]

Identifier: 119946070

GI number: 119946070

Start: 2965768

End: 2966793

Strand: Direct

Name: ddpB [H]

Synonym: Ping_2419

Alternate gene names: 119946070

Gene position: 2965768-2966793 (Clockwise)

Preceding gene: 119946069

Following gene: 119946071

Centisome position: 65.04

GC content: 43.37

Gene sequence:

>1026_bases
ATGTTGTATGACAAAGCTACTTTAATTCTAAAACGTTTATTGTTAGCGATCCCGACGCTATTGGGGGTGCTAGTCATCTC
CTTTAGCCTTACTCGCGCACTTCCTGGTGATCCGGCAGTCTATTTTGCCGGCGCTATGGCCGATGAGGCTTCTATACAGC
AAGTGCGTGAACAACTCGGTCTTGATCGTACTTTAGCGTATCAATTTATTGCCTACTGTAAAAACCTGGCTCAAGGAGAG
CTAGGTCAAAGCCTAAGCACCGGCCAAAGTGTCAGCAGCGAAATAAGTACCCGTTTACCAGCTTCTCTGGAATTAACCCT
GTTTGCCTTATTTATTGCTCTGGTCACCTCCATTCCATTGGGGATACTCTCAGCACTTAAGCCAAATACATGGATTGATC
ATCTTTGTCGAATATTGGTCACCGCGGGGGCTTCAACGCCGATTTTCTTTAGCGGGCTATTTTTGATGTTTGTATTCTAT
TATTTGTTAGGTTGGGCACCCTCCCCCATCGGGCGGCTAGATTTTATTTATTTAGCCCCTACACATGTCACCGGGTTCTT
TACTATTGATGCGCTTTTAGAAGCCGATTTTGAAACTTTTTACGCAGCACTCTCGCAATTGATTTTGCCCGCAATCACGT
TAGCTTTGTGTGCTTTGGCACCTATTGCAAGAATGACTCGTTCGTCAATGATAACCGCACTTGGCAGTGAGTACGTTAAG
GCTGCTAAAGCCAATGGTATCAAGTCCTCGGTACGCATTTATGTTTATGCGCTACAAAATGCATCTCTGCCATTATTAAC
TGTAATAGGTTTAGTTTTTGGTTTCCTGCTTGGCGGTAATGTATTAGTTGAAAAAGTTTACTCTTGGCCAGGGGTTGGAA
CATTTGCAATTGATGCCTTAGTCGCCTCAGATTATGCGGCAATTCAAGGGTTTGTCCTTATTATGGCGGTATTGTTTGTC
TCTCTTAATCTTATTATTGACATTCTTTACACACTCTTTGATCCAAGGATGGGACGTAATGAATAG

Upstream 100 bases:

>100_bases
CATCACTTGATGTTGTTATGCAAAAAAATGTAAGTGGCTATGTGAATTGGTTTCACCGCCAGTTGGATATTCGTACCTTT
AGCAAGGAGTAAGCAATCCA

Downstream 100 bases:

>100_bases
CGTGACTATAGCTCAAGAAAACTTAATACAACGCCTGTGGTATTTAGCACGCAAAAATCCACTTTCTTTACTTTCATTAG
CACTCTTTGGTATGTATGTT

Product: ABC transporter D-Ala-D-Ala-binding inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MLYDKATLILKRLLLAIPTLLGVLVISFSLTRALPGDPAVYFAGAMADEASIQQVREQLGLDRTLAYQFIAYCKNLAQGE
LGQSLSTGQSVSSEISTRLPASLELTLFALFIALVTSIPLGILSALKPNTWIDHLCRILVTAGASTPIFFSGLFLMFVFY
YLLGWAPSPIGRLDFIYLAPTHVTGFFTIDALLEADFETFYAALSQLILPAITLALCALAPIARMTRSSMITALGSEYVK
AAKANGIKSSVRIYVYALQNASLPLLTVIGLVFGFLLGGNVLVEKVYSWPGVGTFAIDALVASDYAAIQGFVLIMAVLFV
SLNLIIDILYTLFDPRMGRNE

Sequences:

>Translated_341_residues
MLYDKATLILKRLLLAIPTLLGVLVISFSLTRALPGDPAVYFAGAMADEASIQQVREQLGLDRTLAYQFIAYCKNLAQGE
LGQSLSTGQSVSSEISTRLPASLELTLFALFIALVTSIPLGILSALKPNTWIDHLCRILVTAGASTPIFFSGLFLMFVFY
YLLGWAPSPIGRLDFIYLAPTHVTGFFTIDALLEADFETFYAALSQLILPAITLALCALAPIARMTRSSMITALGSEYVK
AAKANGIKSSVRIYVYALQNASLPLLTVIGLVFGFLLGGNVLVEKVYSWPGVGTFAIDALVASDYAAIQGFVLIMAVLFV
SLNLIIDILYTLFDPRMGRNE
>Mature_341_residues
MLYDKATLILKRLLLAIPTLLGVLVISFSLTRALPGDPAVYFAGAMADEASIQQVREQLGLDRTLAYQFIAYCKNLAQGE
LGQSLSTGQSVSSEISTRLPASLELTLFALFIALVTSIPLGILSALKPNTWIDHLCRILVTAGASTPIFFSGLFLMFVFY
YLLGWAPSPIGRLDFIYLAPTHVTGFFTIDALLEADFETFYAALSQLILPAITLALCALAPIARMTRSSMITALGSEYVK
AAKANGIKSSVRIYVYALQNASLPLLTVIGLVFGFLLGGNVLVEKVYSWPGVGTFAIDALVASDYAAIQGFVLIMAVLFV
SLNLIIDILYTLFDPRMGRNE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=319, Percent_Identity=45.4545454545455, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=38.7573964497041, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1787053, Length=327, Percent_Identity=36.3914373088685, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1789888, Length=336, Percent_Identity=32.7380952380952, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787497, Length=331, Percent_Identity=29.607250755287, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=32.2463768115942, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1788504, Length=376, Percent_Identity=23.1382978723404, Blast_Score=104, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36931; Mature: 36931

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYDKATLILKRLLLAIPTLLGVLVISFSLTRALPGDPAVYFAGAMADEASIQQVREQLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHCCHHHHHHHHHHHC
LDRTLAYQFIAYCKNLAQGELGQSLSTGQSVSSEISTRLPASLELTLFALFIALVTSIPL
CCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GILSALKPNTWIDHLCRILVTAGASTPIFFSGLFLMFVFYYLLGWAPSPIGRLDFIYLAP
HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
THVTGFFTIDALLEADFETFYAALSQLILPAITLALCALAPIARMTRSSMITALGSEYVK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKANGIKSSVRIYVYALQNASLPLLTVIGLVFGFLLGGNVLVEKVYSWPGVGTFAIDAL
HHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH
VASDYAAIQGFVLIMAVLFVSLNLIIDILYTLFDPRMGRNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLYDKATLILKRLLLAIPTLLGVLVISFSLTRALPGDPAVYFAGAMADEASIQQVREQLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHCCHHHHHHHHHHHC
LDRTLAYQFIAYCKNLAQGELGQSLSTGQSVSSEISTRLPASLELTLFALFIALVTSIPL
CCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GILSALKPNTWIDHLCRILVTAGASTPIFFSGLFLMFVFYYLLGWAPSPIGRLDFIYLAP
HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
THVTGFFTIDALLEADFETFYAALSQLILPAITLALCALAPIARMTRSSMITALGSEYVK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKANGIKSSVRIYVYALQNASLPLLTVIGLVFGFLLGGNVLVEKVYSWPGVGTFAIDAL
HHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH
VASDYAAIQGFVLIMAVLFVSLNLIIDILYTLFDPRMGRNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]