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The map label for this gene is ddpA [H]

Identifier: 119946069

GI number: 119946069

Start: 2964125

End: 2965759

Strand: Direct

Name: ddpA [H]

Synonym: Ping_2418

Alternate gene names: 119946069

Gene position: 2964125-2965759 (Clockwise)

Preceding gene: 119946068

Following gene: 119946070

Centisome position: 65.01

GC content: 42.75

Gene sequence:

>1635_bases
ATGCTAAATAATCTAAAAAGTAAAATAAAATTACCAACCAAAGCGGGCTTGTATGCTTTGCTGGCTGTCTCCGTATCAGG
TGTTTTATCATCTGGTGCGCATGCGGTTTCACGAGAAAATACCCTGGTCGTTGTATCAGGAGCAAGTATTAACAGCTTAG
ATATTCACCGTGCAGGCACTAATCGCGCAAGTTATCAGGTAGCGGTCAATATGTATGACCGTCTGGTGACGTTCAATATC
AAAGATAGTGGCAATGGTAGCCTCAAATACGACTCAGAAATGATTAAACCTGAACTTGCTAAGAGTTGGGAGCTTGTCGA
TGATGGTATGAGTTATTTATTCCATTTACGTGAAGATGCTATTTTCTGGGATGGTACACCGGTCACTGCAAGCGACGTAA
AATGGTCCTTTGACCGCGCCGTCAGTCTTGGTGGTTTTCCAACGGTACAAATGAAAGCGGGAGGCCTCATATCACCAGAG
CAATTTGAAGCAGTAGACGCACACACCTTTAAAATAAAAATGCAACAAGCCAGTAAACTGACCTTGCCGGATCTGGCTGT
GCCAATCCCCATTGTTATTAATGCTGATATCGCTAAAAAGCATGTCACTAAAGATGATCCATGGGCAACAGAATACCTGC
ACAAAACCCCAGCAGGGGGTGGTGCCTATATGCTTGAGCGCTGGACGCCGGGTCAACAACTGGTCTACAAACGTTTCGAC
AAGTGGAAAAGTGGCTCTTTACCAAAAATGGAGCGTGTAATTGTACGTGAAGTTCCCAGTGCAGCAACCCGCCGTGCTTT
AATTGAACGTGGCGATGCCGACGTAGCACTTAGCCTTTCAGCAAAAGATGTAAAAGAGCTTAAAAGTAATAATAATCTTA
AGGTTGCTAGCTCTAACATAGATAATACTTTGCATGCCTTAGGGATGAATATGAAATTTGAACCCTTTAAGCATATCAAA
GTTCGACAAGCCATTGCTTATGCTATTCCCTATCAGCAAATTTTTGATGTGGCAGCCTACGGGATAGGTGAACCTATGTG
GGGACGTGATAGCAAATATGCTACTTCAGCTGTCTGGCCTCAACCTTTCCCGTATCACACAGATTTAGCTAAAGCCAAAG
CTTTGCTTGCAGAAGCGGGTTACGCAGATGGTTTCAGTGTCCCGATTTCAATCAACCTGGGCTTTGCTCAGTGGACAGAA
CCAACAGCACTACTTATTCAAGAAAATCTAAAGGCAATCGGCATTGATGCACCTGTTAATAAGATCCCAGGCGCTAGCTG
GCGTACGAAAGCTTTGGTTGAAAAGGGCTTAGAGTTACACCTGAAGAACTTTGGCGGTTGGCTTAACTATCCGGATTATT
ACTTCTATTGGGCATACATTAAAGGTCATCTATTTAACTCTATGAACTATGATAATACCGAAATTAAGACCTTAGTTGAC
AGTACACTGAATATGCCAATCGATGACAAGCAATATACTCAAAACGTTTTACGAATGATCGATATAGCAACGGATGAAGT
GCCAATGATTCCTTTATGGCAGCCATCACTTGATGTTGTTATGCAAAAAAATGTAAGTGGCTATGTGAATTGGTTTCACC
GCCAGTTGGATATTCGTACCTTTAGCAAGGAGTAA

Upstream 100 bases:

>100_bases
ATAGCCGTGACATTACTCATTTCGGCGGGTGGCGAGCATTTTGCCAAGCTGAAAGTCTTTAGTTACACATTTTCTACATT
TTTCTATCTATGGAGCGATT

Downstream 100 bases:

>100_bases
GCAATCCAATGTTGTATGACAAAGCTACTTTAATTCTAAAACGTTTATTGTTAGCGATCCCGACGCTATTGGGGGTGCTA
GTCATCTCCTTTAGCCTTAC

Product: ABC transporter extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MLNNLKSKIKLPTKAGLYALLAVSVSGVLSSGAHAVSRENTLVVVSGASINSLDIHRAGTNRASYQVAVNMYDRLVTFNI
KDSGNGSLKYDSEMIKPELAKSWELVDDGMSYLFHLREDAIFWDGTPVTASDVKWSFDRAVSLGGFPTVQMKAGGLISPE
QFEAVDAHTFKIKMQQASKLTLPDLAVPIPIVINADIAKKHVTKDDPWATEYLHKTPAGGGAYMLERWTPGQQLVYKRFD
KWKSGSLPKMERVIVREVPSAATRRALIERGDADVALSLSAKDVKELKSNNNLKVASSNIDNTLHALGMNMKFEPFKHIK
VRQAIAYAIPYQQIFDVAAYGIGEPMWGRDSKYATSAVWPQPFPYHTDLAKAKALLAEAGYADGFSVPISINLGFAQWTE
PTALLIQENLKAIGIDAPVNKIPGASWRTKALVEKGLELHLKNFGGWLNYPDYYFYWAYIKGHLFNSMNYDNTEIKTLVD
STLNMPIDDKQYTQNVLRMIDIATDEVPMIPLWQPSLDVVMQKNVSGYVNWFHRQLDIRTFSKE

Sequences:

>Translated_544_residues
MLNNLKSKIKLPTKAGLYALLAVSVSGVLSSGAHAVSRENTLVVVSGASINSLDIHRAGTNRASYQVAVNMYDRLVTFNI
KDSGNGSLKYDSEMIKPELAKSWELVDDGMSYLFHLREDAIFWDGTPVTASDVKWSFDRAVSLGGFPTVQMKAGGLISPE
QFEAVDAHTFKIKMQQASKLTLPDLAVPIPIVINADIAKKHVTKDDPWATEYLHKTPAGGGAYMLERWTPGQQLVYKRFD
KWKSGSLPKMERVIVREVPSAATRRALIERGDADVALSLSAKDVKELKSNNNLKVASSNIDNTLHALGMNMKFEPFKHIK
VRQAIAYAIPYQQIFDVAAYGIGEPMWGRDSKYATSAVWPQPFPYHTDLAKAKALLAEAGYADGFSVPISINLGFAQWTE
PTALLIQENLKAIGIDAPVNKIPGASWRTKALVEKGLELHLKNFGGWLNYPDYYFYWAYIKGHLFNSMNYDNTEIKTLVD
STLNMPIDDKQYTQNVLRMIDIATDEVPMIPLWQPSLDVVMQKNVSGYVNWFHRQLDIRTFSKE
>Mature_544_residues
MLNNLKSKIKLPTKAGLYALLAVSVSGVLSSGAHAVSRENTLVVVSGASINSLDIHRAGTNRASYQVAVNMYDRLVTFNI
KDSGNGSLKYDSEMIKPELAKSWELVDDGMSYLFHLREDAIFWDGTPVTASDVKWSFDRAVSLGGFPTVQMKAGGLISPE
QFEAVDAHTFKIKMQQASKLTLPDLAVPIPIVINADIAKKHVTKDDPWATEYLHKTPAGGGAYMLERWTPGQQLVYKRFD
KWKSGSLPKMERVIVREVPSAATRRALIERGDADVALSLSAKDVKELKSNNNLKVASSNIDNTLHALGMNMKFEPFKHIK
VRQAIAYAIPYQQIFDVAAYGIGEPMWGRDSKYATSAVWPQPFPYHTDLAKAKALLAEAGYADGFSVPISINLGFAQWTE
PTALLIQENLKAIGIDAPVNKIPGASWRTKALVEKGLELHLKNFGGWLNYPDYYFYWAYIKGHLFNSMNYDNTEIKTLVD
STLNMPIDDKQYTQNVLRMIDIATDEVPMIPLWQPSLDVVMQKNVSGYVNWFHRQLDIRTFSKE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=531, Percent_Identity=29.5668549905838, Blast_Score=159, Evalue=6e-40,
Organism=Escherichia coli, GI1787052, Length=522, Percent_Identity=27.5862068965517, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789966, Length=433, Percent_Identity=25.4041570438799, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI1787551, Length=348, Percent_Identity=27.0114942528736, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1789887, Length=419, Percent_Identity=25.2983293556086, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081878, Length=418, Percent_Identity=25.3588516746411, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787495, Length=412, Percent_Identity=24.0291262135922, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60743; Mature: 60743

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNLKSKIKLPTKAGLYALLAVSVSGVLSSGAHAVSRENTLVVVSGASINSLDIHRAGT
CCCCCCHHEECCCHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECCCCCCEEEEECCC
NRASYQVAVNMYDRLVTFNIKDSGNGSLKYDSEMIKPELAKSWELVDDGMSYLFHLREDA
CCCEEEEEEEEECEEEEEEECCCCCCCEEECHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
IFWDGTPVTASDVKWSFDRAVSLGGFPTVQMKAGGLISPEQFEAVDAHTFKIKMQQASKL
EEECCCCCCCCCCCCCHHHEEECCCCCEEEEECCCCCCHHHHHHCCCEEEEEEECCCCCC
TLPDLAVPIPIVINADIAKKHVTKDDPWATEYLHKTPAGGGAYMLERWTPGQQLVYKRFD
CCCCCCCCCEEEEECCHHHHCCCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH
KWKSGSLPKMERVIVREVPSAATRRALIERGDADVALSLSAKDVKELKSNNNLKVASSNI
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCEEEECCCC
DNTLHALGMNMKFEPFKHIKVRQAIAYAIPYQQIFDVAAYGIGEPMWGRDSKYATSAVWP
CHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCC
QPFPYHTDLAKAKALLAEAGYADGFSVPISINLGFAQWTEPTALLIQENLKAIGIDAPVN
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCHHCCCCCEEEEECCCCEEECCCCHH
KIPGASWRTKALVEKGLELHLKNFGGWLNYPDYYFYWAYIKGHLFNSMNYDNTEIKTLVD
HCCCCCHHHHHHHHCCCEEEEHHCCCCCCCCCCEEEEEEEEHHHHCCCCCCCHHHHHHHH
STLNMPIDDKQYTQNVLRMIDIATDEVPMIPLWQPSLDVVMQKNVSGYVNWFHRQLDIRT
HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHEEEEE
FSKE
CCCC
>Mature Secondary Structure
MLNNLKSKIKLPTKAGLYALLAVSVSGVLSSGAHAVSRENTLVVVSGASINSLDIHRAGT
CCCCCCHHEECCCHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECCCCCCEEEEECCC
NRASYQVAVNMYDRLVTFNIKDSGNGSLKYDSEMIKPELAKSWELVDDGMSYLFHLREDA
CCCEEEEEEEEECEEEEEEECCCCCCCEEECHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
IFWDGTPVTASDVKWSFDRAVSLGGFPTVQMKAGGLISPEQFEAVDAHTFKIKMQQASKL
EEECCCCCCCCCCCCCHHHEEECCCCCEEEEECCCCCCHHHHHHCCCEEEEEEECCCCCC
TLPDLAVPIPIVINADIAKKHVTKDDPWATEYLHKTPAGGGAYMLERWTPGQQLVYKRFD
CCCCCCCCCEEEEECCHHHHCCCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH
KWKSGSLPKMERVIVREVPSAATRRALIERGDADVALSLSAKDVKELKSNNNLKVASSNI
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCEEEECCCC
DNTLHALGMNMKFEPFKHIKVRQAIAYAIPYQQIFDVAAYGIGEPMWGRDSKYATSAVWP
CHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCC
QPFPYHTDLAKAKALLAEAGYADGFSVPISINLGFAQWTEPTALLIQENLKAIGIDAPVN
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCHHCCCCCEEEEECCCCEEECCCCHH
KIPGASWRTKALVEKGLELHLKNFGGWLNYPDYYFYWAYIKGHLFNSMNYDNTEIKTLVD
HCCCCCHHHHHHHHCCCEEEEHHCCCCCCCCCCEEEEEEEEHHHHCCCCCCCHHHHHHHH
STLNMPIDDKQYTQNVLRMIDIATDEVPMIPLWQPSLDVVMQKNVSGYVNWFHRQLDIRT
HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHEEEEE
FSKE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]