| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is yegE [H]
Identifier: 119945968
GI number: 119945968
Start: 2805863
End: 2808262
Strand: Reverse
Name: yegE [H]
Synonym: Ping_2308
Alternate gene names: 119945968
Gene position: 2808262-2805863 (Counterclockwise)
Preceding gene: 119945969
Following gene: 119945967
Centisome position: 61.59
GC content: 44.25
Gene sequence:
>2400_bases ATGACGGCTAATCAAACCTTAGCCACTATGCTTGACCTTACTTTGCCAGACTTAGTGGGTAAAAATTTGGATGTGTTGCT GACATCATCCAACCGTTTGCTGTTTCATCTGCAAGTGATGACAGTCTTGCATGTTCAGGGTCATATTGAAGAGATTTCCA TGTCTCTGGCTGGCGCAAAGGGGATCGATATTCCGGTCATTTTTAATGCCGTGCGACGAAATGTGGACGCAGAGAGCTAT ACCGAATGTGTAGTCATTCGTGTCAATGAACGCAAGCGTCTGGAAGATGAATTGTTTAATATAAAAAAAGCAACCGAACA AGTTCCCGGTGCCCTCTACCAATTTTTGCTCTGTGCAGACGGTAGTTCCCGTTTTCCTTACGCGAGTGAGGGAATACGTA ATGTCTATGAGTTAAGCCCACTACAGTTAAAAAAAGACGCAGATTTAGCCTTTAAACGCATTCACTTGGATGATGTAGAA GCGATCCATCAGCAGATTGCCGATTCTGCCAAAAACCTCACTGTATGGCATCAACAATATCGGGTGGTTTTACCCAAAGC TGGCATCCGCTGGCTGGAGGGGAATGCCACCCCTGAAGCCCGGGCCAATGGCAGTACACTATGGCACGGTTATATTAACG ATATTACCGAGCGAAAAGCATTGGAACTTACGTTGTCCAATGAATTTGAACGGACGCGGGTGACGCTAAGTTCTATCGGT GATGCGGTTATTACTACCAATGAACAGCAAGTAGTCGAGTATATCAATCCCATTGCAGAGCACCTAACTGGCTGGGCGCT GGCCGACGCCATAGGTCAACCCGTAACCAGGGTGTTTAACATCATTAATCAACATACTCGGCTGGTGGCAAAGACCGCCA TTGCTCGTTGTCTGGACGAGCGTGCCATTGTTGGGCCAGTTTGCGACACAGTATTGCTCAGTAAGGATGGTAATGAGTAT TGGGTAGAGAAATCTGCAGCACCGATTTTTGCCCCTGGTGATGTAATAATCGGTGTCGTTATGGTTTTTCGTGATGTGAC CGGCCAAAAAAGACTGAGGGAGGAAGTGGCGTATCATCGTGCCAGTCATGATCATTTGACTGGACTTGCGAACCGCAGAG AATTTGATCGGATGTTACTTGAAATGTTTGAGTCATCAATTTCTCCTGGTGTTGCACATGTATTGTGTTGCATCGATTTG GATCAGTTTAAACTCATCAATGACAGCTGTGGACACTTTGCTGGAGACACTCTATTGAAAGAGATTTCGGTGGTACTTAC TCAAACCGTGCGTGCTAAAGATCTGGTGGCGCGTATAGGGGGGGATGAATTTGCTATTTTATTTCAGAGCAGTGATCTGC AAGCAGCTAAACAAATAGCTCAAGACGTTTGTGACAAAATCGCACAAATTCGTTTTCATCACAAAGATAAATTTTATCAT GTTGGTGCCAGCATAGGCGTAGTGCCTTTGGATGGGAGATGGGATAATGCCGAAGCAGCGCAACAGGCTGGAGAAATCGC CTGTTTCGCTGCGAAACATGAAGGTCGCGGGCGGGTGCACATGTATACAGATTTAGACAAAACTGTCATGGAGCAGCGAG ATCAGATGCAGTGGGCATCACGCTTGCAACAAGCCATTGATGAGAATCGCTTTGAACTTTTTGCCCAACCCATTATGGCA CTGGATGAACAAGCAGAACAAGGACTACATTTTGAGGTTCTGTTGCGCTTACGTGAGACCGGTGGAGCGCTGGTCTCGCC TGCGGTATTTATGGCTTCCGCTGAACAATTTGGCTTAGCCACGCAAATCGATCATTGGGTGGTAAATAACGTATTAAAGT GGATGAAAACCCATGCCGATGAGTTGGAAAAAGTTCATATTATTGCCGTAAACTTATCTGGAAATTCGGTTGGTGATCGT GATTTTCATCAATTTTTGATCGAGGCATTGGATCACGCTCAGGTACCCGTACAAAAAATTTCATTCGAAATTACTGAGAC AGCAGCAATCGAGAATCTGGATATCGCCACTGAGTTTATTGCGATGGTTCATCAGCGCGGTGCGAAAATATCCCTCGATG ATTTTGGCAGTGGTATGTCATCAATGGCTTATCTTAAAAAACTTCCAGTTGATTATTTGAAAATTGACGGACAGTTTGTG AAAGATATGGAAAACGACACAGTTGATTGTGCGATGGTTCGTAGTATTAAGCAAATTGCGGATTTAACCGGAAAAATTAC TATTGCTGAGTTTGTTGAAAATGCGAAGATATTGATGTTATTAAAAGATATAGGTGTTGATTTTGCCCAGGGATATCACA TTGGTAAACCACAGCCAATCAATGAAATTTTTGCCTGGAAAAATATAACGAATACAAGACTAAGCGGTGAAGATCAGTAG
Upstream 100 bases:
>100_bases AAGCAGAACTAAAGAGTGGATATTTAAAGTGGACATTTCAAAATTTAATCTTCATGAGGCACCCTGTGGCTTGTTTATCT TTGATAACAGCTTAAAGATA
Downstream 100 bases:
>100_bases ATGGATTTTTCGTCGACAAAGGGATAATAGCGGTGAACGTTGTTAACACACTACTTTAACGTTTCTGACACTGTTGATTA TGGAAGATAAACCCTGTGTT
Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
Products: NA
Alternate protein names: DGC [H]
Number of amino acids: Translated: 799; Mature: 798
Protein sequence:
>799_residues MTANQTLATMLDLTLPDLVGKNLDVLLTSSNRLLFHLQVMTVLHVQGHIEEISMSLAGAKGIDIPVIFNAVRRNVDAESY TECVVIRVNERKRLEDELFNIKKATEQVPGALYQFLLCADGSSRFPYASEGIRNVYELSPLQLKKDADLAFKRIHLDDVE AIHQQIADSAKNLTVWHQQYRVVLPKAGIRWLEGNATPEARANGSTLWHGYINDITERKALELTLSNEFERTRVTLSSIG DAVITTNEQQVVEYINPIAEHLTGWALADAIGQPVTRVFNIINQHTRLVAKTAIARCLDERAIVGPVCDTVLLSKDGNEY WVEKSAAPIFAPGDVIIGVVMVFRDVTGQKRLREEVAYHRASHDHLTGLANRREFDRMLLEMFESSISPGVAHVLCCIDL DQFKLINDSCGHFAGDTLLKEISVVLTQTVRAKDLVARIGGDEFAILFQSSDLQAAKQIAQDVCDKIAQIRFHHKDKFYH VGASIGVVPLDGRWDNAEAAQQAGEIACFAAKHEGRGRVHMYTDLDKTVMEQRDQMQWASRLQQAIDENRFELFAQPIMA LDEQAEQGLHFEVLLRLRETGGALVSPAVFMASAEQFGLATQIDHWVVNNVLKWMKTHADELEKVHIIAVNLSGNSVGDR DFHQFLIEALDHAQVPVQKISFEITETAAIENLDIATEFIAMVHQRGAKISLDDFGSGMSSMAYLKKLPVDYLKIDGQFV KDMENDTVDCAMVRSIKQIADLTGKITIAEFVENAKILMLLKDIGVDFAQGYHIGKPQPINEIFAWKNITNTRLSGEDQ
Sequences:
>Translated_799_residues MTANQTLATMLDLTLPDLVGKNLDVLLTSSNRLLFHLQVMTVLHVQGHIEEISMSLAGAKGIDIPVIFNAVRRNVDAESY TECVVIRVNERKRLEDELFNIKKATEQVPGALYQFLLCADGSSRFPYASEGIRNVYELSPLQLKKDADLAFKRIHLDDVE AIHQQIADSAKNLTVWHQQYRVVLPKAGIRWLEGNATPEARANGSTLWHGYINDITERKALELTLSNEFERTRVTLSSIG DAVITTNEQQVVEYINPIAEHLTGWALADAIGQPVTRVFNIINQHTRLVAKTAIARCLDERAIVGPVCDTVLLSKDGNEY WVEKSAAPIFAPGDVIIGVVMVFRDVTGQKRLREEVAYHRASHDHLTGLANRREFDRMLLEMFESSISPGVAHVLCCIDL DQFKLINDSCGHFAGDTLLKEISVVLTQTVRAKDLVARIGGDEFAILFQSSDLQAAKQIAQDVCDKIAQIRFHHKDKFYH VGASIGVVPLDGRWDNAEAAQQAGEIACFAAKHEGRGRVHMYTDLDKTVMEQRDQMQWASRLQQAIDENRFELFAQPIMA LDEQAEQGLHFEVLLRLRETGGALVSPAVFMASAEQFGLATQIDHWVVNNVLKWMKTHADELEKVHIIAVNLSGNSVGDR DFHQFLIEALDHAQVPVQKISFEITETAAIENLDIATEFIAMVHQRGAKISLDDFGSGMSSMAYLKKLPVDYLKIDGQFV KDMENDTVDCAMVRSIKQIADLTGKITIAEFVENAKILMLLKDIGVDFAQGYHIGKPQPINEIFAWKNITNTRLSGEDQ >Mature_798_residues TANQTLATMLDLTLPDLVGKNLDVLLTSSNRLLFHLQVMTVLHVQGHIEEISMSLAGAKGIDIPVIFNAVRRNVDAESYT ECVVIRVNERKRLEDELFNIKKATEQVPGALYQFLLCADGSSRFPYASEGIRNVYELSPLQLKKDADLAFKRIHLDDVEA IHQQIADSAKNLTVWHQQYRVVLPKAGIRWLEGNATPEARANGSTLWHGYINDITERKALELTLSNEFERTRVTLSSIGD AVITTNEQQVVEYINPIAEHLTGWALADAIGQPVTRVFNIINQHTRLVAKTAIARCLDERAIVGPVCDTVLLSKDGNEYW VEKSAAPIFAPGDVIIGVVMVFRDVTGQKRLREEVAYHRASHDHLTGLANRREFDRMLLEMFESSISPGVAHVLCCIDLD QFKLINDSCGHFAGDTLLKEISVVLTQTVRAKDLVARIGGDEFAILFQSSDLQAAKQIAQDVCDKIAQIRFHHKDKFYHV GASIGVVPLDGRWDNAEAAQQAGEIACFAAKHEGRGRVHMYTDLDKTVMEQRDQMQWASRLQQAIDENRFELFAQPIMAL DEQAEQGLHFEVLLRLRETGGALVSPAVFMASAEQFGLATQIDHWVVNNVLKWMKTHADELEKVHIIAVNLSGNSVGDRD FHQFLIEALDHAQVPVQKISFEITETAAIENLDIATEFIAMVHQRGAKISLDDFGSGMSSMAYLKKLPVDYLKIDGQFVK DMENDTVDCAMVRSIKQIADLTGKITIAEFVENAKILMLLKDIGVDFAQGYHIGKPQPINEIFAWKNITNTRLSGEDQ
Specific function: Cyclic-di-GMP is a second messenger which controls cell surface-associated traits in bacteria [H]
COG id: COG2200
COG function: function code T; FOG: EAL domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]
Homologues:
Organism=Escherichia coli, GI1788381, Length=661, Percent_Identity=27.6853252647504, Blast_Score=236, Evalue=6e-63, Organism=Escherichia coli, GI1787541, Length=586, Percent_Identity=25.2559726962457, Blast_Score=186, Evalue=6e-48, Organism=Escherichia coli, GI1788849, Length=257, Percent_Identity=35.7976653696498, Blast_Score=168, Evalue=1e-42, Organism=Escherichia coli, GI87082096, Length=389, Percent_Identity=27.2493573264781, Blast_Score=149, Evalue=1e-36, Organism=Escherichia coli, GI87081921, Length=423, Percent_Identity=24.113475177305, Blast_Score=123, Evalue=4e-29, Organism=Escherichia coli, GI1790496, Length=255, Percent_Identity=32.156862745098, Blast_Score=119, Evalue=1e-27, Organism=Escherichia coli, GI1788502, Length=260, Percent_Identity=28.8461538461538, Blast_Score=108, Evalue=2e-24, Organism=Escherichia coli, GI87081743, Length=250, Percent_Identity=29.6, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=27.34375, Blast_Score=104, Evalue=3e-23, Organism=Escherichia coli, GI226510982, Length=420, Percent_Identity=24.047619047619, Blast_Score=103, Evalue=5e-23, Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=30.1255230125523, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI87081881, Length=204, Percent_Identity=33.8235294117647, Blast_Score=99, Evalue=9e-22, Organism=Escherichia coli, GI1789650, Length=430, Percent_Identity=22.7906976744186, Blast_Score=99, Evalue=9e-22, Organism=Escherichia coli, GI1786507, Length=248, Percent_Identity=28.2258064516129, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=30.8988764044944, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=29.746835443038, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1787055, Length=276, Percent_Identity=25.3623188405797, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=34.3949044585987, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI87082007, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI87081974, Length=183, Percent_Identity=26.775956284153, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=32.5153374233129, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1788956, Length=110, Percent_Identity=37.2727272727273, Blast_Score=66, Evalue=8e-12, Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=28.2208588957055, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR007895 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013656 - InterPro: IPR013655 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF05231 MASE1; PF08447 PAS_3; PF08448 PAS_4 [H]
EC number: =2.7.7.65 [H]
Molecular weight: Translated: 89325; Mature: 89194
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTANQTLATMLDLTLPDLVGKNLDVLLTSSNRLLFHLQVMTVLHVQGHIEEISMSLAGAK CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCC GIDIPVIFNAVRRNVDAESYTECVVIRVNERKRLEDELFNIKKATEQVPGALYQFLLCAD CCCHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GSSRFPYASEGIRNVYELSPLQLKKDADLAFKRIHLDDVEAIHQQIADSAKNLTVWHQQY CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEHH RVVLPKAGIRWLEGNATPEARANGSTLWHGYINDITERKALELTLSNEFERTRVTLSSIG EEEECCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHEEEEEECCCHHHHHHHHHHCC DAVITTNEQQVVEYINPIAEHLTGWALADAIGQPVTRVFNIINQHTRLVAKTAIARCLDE CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC RAIVGPVCDTVLLSKDGNEYWVEKSAAPIFAPGDVIIGVVMVFRDVTGQKRLREEVAYHR CCCCCHHHHHEEEECCCCEEEEECCCCCEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHH ASHDHLTGLANRREFDRMLLEMFESSISPGVAHVLCCIDLDQFKLINDSCGHFAGDTLLK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEECCHHHHHHCCCCCCHHHHHHHH EISVVLTQTVRAKDLVARIGGDEFAILFQSSDLQAAKQIAQDVCDKIAQIRFHHKDKFYH HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE VGASIGVVPLDGRWDNAEAAQQAGEIACFAAKHEGRGRVHMYTDLDKTVMEQRDQMQWAS ECCCEEEEECCCCCCCHHHHHHCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHH RLQQAIDENRFELFAQPIMALDEQAEQGLHFEVLLRLRETGGALVSPAVFMASAEQFGLA HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHCHHHHHHHHHHHCCH TQIDHWVVNNVLKWMKTHADELEKVHIIAVNLSGNSVGDRDFHQFLIEALDHAQVPVQKI HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHH SFEITETAAIENLDIATEFIAMVHQRGAKISLDDFGSGMSSMAYLKKLPVDYLKIDGQFV EEEEEHHHHHCCCHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHHHHCCHHHEEECCHHH KDMENDTVDCAMVRSIKQIADLTGKITIAEFVENAKILMLLKDIGVDFAQGYHIGKPQPI HHCCCCCHHHHHHHHHHHHHHHCCCEEHHHHHCCCCEEEEHHHHCCHHHCCCCCCCCCCH NEIFAWKNITNTRLSGEDQ HHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TANQTLATMLDLTLPDLVGKNLDVLLTSSNRLLFHLQVMTVLHVQGHIEEISMSLAGAK CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCC GIDIPVIFNAVRRNVDAESYTECVVIRVNERKRLEDELFNIKKATEQVPGALYQFLLCAD CCCHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GSSRFPYASEGIRNVYELSPLQLKKDADLAFKRIHLDDVEAIHQQIADSAKNLTVWHQQY CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEHH RVVLPKAGIRWLEGNATPEARANGSTLWHGYINDITERKALELTLSNEFERTRVTLSSIG EEEECCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHEEEEEECCCHHHHHHHHHHCC DAVITTNEQQVVEYINPIAEHLTGWALADAIGQPVTRVFNIINQHTRLVAKTAIARCLDE CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC RAIVGPVCDTVLLSKDGNEYWVEKSAAPIFAPGDVIIGVVMVFRDVTGQKRLREEVAYHR CCCCCHHHHHEEEECCCCEEEEECCCCCEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHH ASHDHLTGLANRREFDRMLLEMFESSISPGVAHVLCCIDLDQFKLINDSCGHFAGDTLLK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEECCHHHHHHCCCCCCHHHHHHHH EISVVLTQTVRAKDLVARIGGDEFAILFQSSDLQAAKQIAQDVCDKIAQIRFHHKDKFYH HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE VGASIGVVPLDGRWDNAEAAQQAGEIACFAAKHEGRGRVHMYTDLDKTVMEQRDQMQWAS ECCCEEEEECCCCCCCHHHHHHCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHH RLQQAIDENRFELFAQPIMALDEQAEQGLHFEVLLRLRETGGALVSPAVFMASAEQFGLA HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHCHHHHHHHHHHHCCH TQIDHWVVNNVLKWMKTHADELEKVHIIAVNLSGNSVGDRDFHQFLIEALDHAQVPVQKI HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHH SFEITETAAIENLDIATEFIAMVHQRGAKISLDDFGSGMSSMAYLKKLPVDYLKIDGQFV EEEEEHHHHHCCCHHHHHHHHHHHHCCCEEEHHHHCCCHHHHHHHHHCCHHHEEECCHHH KDMENDTVDCAMVRSIKQIADLTGKITIAEFVENAKILMLLKDIGVDFAQGYHIGKPQPI HHCCCCCHHHHHHHHHHHHHHHCCCEEHHHHHCCCCEEEEHHHHCCHHHCCCCCCCCCCH NEIFAWKNITNTRLSGEDQ HHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 6094528; 7984428 [H]