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The map label for this gene is cspV [H]

Identifier: 119945819

GI number: 119945819

Start: 2635496

End: 2635705

Strand: Direct

Name: cspV [H]

Synonym: Ping_2158

Alternate gene names: 119945819

Gene position: 2635496-2635705 (Clockwise)

Preceding gene: 119945816

Following gene: 119945820

Centisome position: 57.8

GC content: 40.48

Gene sequence:

>210_bases
ATGTCTAATAAAATACAAGGAACCGTTAAATGGTTCAACGAAGCGAAAGGTTTTGGATTTATCGAGCAAGCATCTGGTCC
AGATGTATTCGCTCACTTTAGTGCTATCGCAAGCGAAGGTTTCAAAACCTTAGCTGAAGGCCAAAAAGTAGAATTCTCTG
TAAGCCAAGGTCAAAAAGGCCCGCAAGCAGACAATATTGTAGCACTTTAA

Upstream 100 bases:

>100_bases
ATTAATAATACCTCGCACTGTAGTTTTTAAGTTCCAGTCTGTTTTTACGCTATTCACGCCCCTTGAAGGCAATTTCACAT
TAAAATTACAGGATATTATT

Downstream 100 bases:

>100_bases
TTTGCTGTGATATTTTAGCGCCGATAGAGCGCTAATTTAATAAAATAAATGGTAGACCTTTACGGGTTTGCCATTTTTTT
TGTCATTAATTGGAAAAATA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSNKIQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQGQKGPQADNIVAL

Sequences:

>Translated_69_residues
MSNKIQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQGQKGPQADNIVAL
>Mature_68_residues
SNKIQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQGQKGPQADNIVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=65.6716417910448, Blast_Score=92, Evalue=9e-21,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=62.8571428571429, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=67.1641791044776, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=61.4285714285714, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=58.8235294117647, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=57.1428571428571, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=55.3846153846154, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7377; Mature: 7246

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKIQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQGQKG
CCCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PQADNIVAL
CCCCCEEEC
>Mature Secondary Structure 
SNKIQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFSVSQGQKG
CCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PQADNIVAL
CCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]