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The map label for this gene is yddU [C]

Identifier: 119945816

GI number: 119945816

Start: 2630156

End: 2631838

Strand: Direct

Name: yddU [C]

Synonym: Ping_2154

Alternate gene names: 119945816

Gene position: 2630156-2631838 (Clockwise)

Preceding gene: 119945813

Following gene: 119945819

Centisome position: 57.68

GC content: 38.56

Gene sequence:

>1683_bases
TTGAAGCAACTGTCTGTGTTAAAAGAAGAAACTTTAAAGCGTTTTATGGATATTTTTGAAACTTCTCATGAAGGACTTTG
GGAAATGGGTCCGGATTTTCAGGTTAATTTTTTAAATCGCAGTTTCTATAACGCCTTTGCTGTCAGTACCAGAGGCTCCA
ACCTGAAGGAGTGGACTGCACTTGTTCATCCTGATGATGTTCATCTCTTTACTCAAAAGGTAGAACAACAAATCGACAAT
ATGACCACTGTTGTCGATAGTGAATATCGCGTAAAGAATAAAGTTGGCGAATATATATGGATAGCGGCTAAGAGCACCTC
CAGATTTGATCCCGATGGTCACTTGATTTATATGGCCGGTTCGCATAAAGATGTGACCGAAGAAAAAGAAAATCAACACA
GACTCTATCAAACTGCCTATATAGATCCCAACACAGGTTTAATGAATGCGCACAAGTTACTTCAGGATTTAAAAGATAAT
TTTAGTCAACAAGCTGGTGCCTTATTGTTTATCAAATTGATTAACTTTAATGTCTATATTGATTCTTATGGCACTTATGC
CGGCCATAAAATAGTTCGGAAATTATTAAACTGTCTCAGTGAGCTATTTATTGGCGATTGTCAGTTTTATCGCCAGAAAT
CGAGTGAATTTGTGATCAGAATAACTAAGCCTGTTACTTCCGAGCGAATAGAAAAATCGATTGAACAGTTGCTGGTAATA
TTTAAACATAACGGCAAAGACCTTAAGAATAACGATATACCAAATTTGAGCGTGGGCATTTGTATGTTGCCATCAAGCGC
GGAATGCGAAAAAACACTTCTGCATCAGGTCAAACTGACCATGATATATGCCCACGAACACACCGACCAGCAATTTGCTT
TTTTTAATGAGCAAATTAAACACATTGTAAAAAAGAGACTTCATATAAAAACAGCTATGAAATCAGCTCTTTATAATAAT
GAATTCCTGTTAAAGTTTCAGCCAATCATACAGTCTAAGACGAAAAAAGTGGACAGTTTCGAGGCACTTATTCGTTGGGA
CAGCCCTGTTTTTGGCGAAATCATGCCCGATGAGTTCATCCCTGCAGCCGAGCAAAATCTAAATATTATCGACATTGGTT
ACTTTGTGCTTGAACAGGCCTGCACATTTATCTGCCGCTACCATGAACTCAACGACCGGCTGGTAAAAATAGCCATTAAT
ATTTCAGGGATACAATTATTACAACATGATTTTGTTGATCGGGTACTTTCTACTGTTAGTCAATTTATGCTTAATAACAG
CGATATCGTGCTCGAGATCACCGAGTCTCTGTTGTTGGACTCTAATAACTTCGCAAAAGAGCAGATAACCAGATTAAGGG
ATAAGGGATTTTCTGTCTCTATGGATGATTTTGGCACCGGATATTCATCCCTAAATAATTTTTTTACTCTGCCTTTTACT
CAACTAAAAATAGATCGTCAAGTCGTCAACCAGTCAATGATGACCACAGAAGCCAGAGCCTACATCGCATTCCTGATTCA
ACTTTGCCAGAATAAGGATATTGAAGTCGTTGCAGAAGGGATTGAAACCCAAGAGATGAGCGATGCAATGAAAGCAATAG
GCGTCAATCTATTGCAGGGATATCTTTTCTCCAAACCGGCATCTGCCGCCGACGCCCTGAATATTTGTGAATACAAGTTT
TAG

Upstream 100 bases:

>100_bases
TATTTGGCTGAGTTTGATAGAAAACAGGCAATATTTCAGCGGCCTTCTCATCAAGATGCCAATCGAATAAGTCTGTATTA
CAAAAAATTAGGAGTGTAAT

Downstream 100 bases:

>100_bases
CCCTTCAAAATGCAATAAGAATTTAAGCTGTCGTAATACCCCCTTTAGTTAACAACATTATTATTGATGAGGTAATTTCA
AGCAGCTTTTAAAGTCACCA

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MKQLSVLKEETLKRFMDIFETSHEGLWEMGPDFQVNFLNRSFYNAFAVSTRGSNLKEWTALVHPDDVHLFTQKVEQQIDN
MTTVVDSEYRVKNKVGEYIWIAAKSTSRFDPDGHLIYMAGSHKDVTEEKENQHRLYQTAYIDPNTGLMNAHKLLQDLKDN
FSQQAGALLFIKLINFNVYIDSYGTYAGHKIVRKLLNCLSELFIGDCQFYRQKSSEFVIRITKPVTSERIEKSIEQLLVI
FKHNGKDLKNNDIPNLSVGICMLPSSAECEKTLLHQVKLTMIYAHEHTDQQFAFFNEQIKHIVKKRLHIKTAMKSALYNN
EFLLKFQPIIQSKTKKVDSFEALIRWDSPVFGEIMPDEFIPAAEQNLNIIDIGYFVLEQACTFICRYHELNDRLVKIAIN
ISGIQLLQHDFVDRVLSTVSQFMLNNSDIVLEITESLLLDSNNFAKEQITRLRDKGFSVSMDDFGTGYSSLNNFFTLPFT
QLKIDRQVVNQSMMTTEARAYIAFLIQLCQNKDIEVVAEGIETQEMSDAMKAIGVNLLQGYLFSKPASAADALNICEYKF

Sequences:

>Translated_560_residues
MKQLSVLKEETLKRFMDIFETSHEGLWEMGPDFQVNFLNRSFYNAFAVSTRGSNLKEWTALVHPDDVHLFTQKVEQQIDN
MTTVVDSEYRVKNKVGEYIWIAAKSTSRFDPDGHLIYMAGSHKDVTEEKENQHRLYQTAYIDPNTGLMNAHKLLQDLKDN
FSQQAGALLFIKLINFNVYIDSYGTYAGHKIVRKLLNCLSELFIGDCQFYRQKSSEFVIRITKPVTSERIEKSIEQLLVI
FKHNGKDLKNNDIPNLSVGICMLPSSAECEKTLLHQVKLTMIYAHEHTDQQFAFFNEQIKHIVKKRLHIKTAMKSALYNN
EFLLKFQPIIQSKTKKVDSFEALIRWDSPVFGEIMPDEFIPAAEQNLNIIDIGYFVLEQACTFICRYHELNDRLVKIAIN
ISGIQLLQHDFVDRVLSTVSQFMLNNSDIVLEITESLLLDSNNFAKEQITRLRDKGFSVSMDDFGTGYSSLNNFFTLPFT
QLKIDRQVVNQSMMTTEARAYIAFLIQLCQNKDIEVVAEGIETQEMSDAMKAIGVNLLQGYLFSKPASAADALNICEYKF
>Mature_560_residues
MKQLSVLKEETLKRFMDIFETSHEGLWEMGPDFQVNFLNRSFYNAFAVSTRGSNLKEWTALVHPDDVHLFTQKVEQQIDN
MTTVVDSEYRVKNKVGEYIWIAAKSTSRFDPDGHLIYMAGSHKDVTEEKENQHRLYQTAYIDPNTGLMNAHKLLQDLKDN
FSQQAGALLFIKLINFNVYIDSYGTYAGHKIVRKLLNCLSELFIGDCQFYRQKSSEFVIRITKPVTSERIEKSIEQLLVI
FKHNGKDLKNNDIPNLSVGICMLPSSAECEKTLLHQVKLTMIYAHEHTDQQFAFFNEQIKHIVKKRLHIKTAMKSALYNN
EFLLKFQPIIQSKTKKVDSFEALIRWDSPVFGEIMPDEFIPAAEQNLNIIDIGYFVLEQACTFICRYHELNDRLVKIAIN
ISGIQLLQHDFVDRVLSTVSQFMLNNSDIVLEITESLLLDSNNFAKEQITRLRDKGFSVSMDDFGTGYSSLNNFFTLPFT
QLKIDRQVVNQSMMTTEARAYIAFLIQLCQNKDIEVVAEGIETQEMSDAMKAIGVNLLQGYLFSKPASAADALNICEYKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=28.6046511627907, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1787541, Length=442, Percent_Identity=27.6018099547511, Blast_Score=172, Evalue=6e-44,
Organism=Escherichia coli, GI226510982, Length=297, Percent_Identity=28.6195286195286, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=31.1475409836066, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=29.2181069958848, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI1787055, Length=426, Percent_Identity=24.6478873239437, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=32.2709163346614, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1788849, Length=441, Percent_Identity=24.7165532879819, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=29.0836653386454, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87082096, Length=429, Percent_Identity=24.9417249417249, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=29.3650793650794, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=31.0756972111554, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1787410, Length=237, Percent_Identity=26.1603375527426, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 64414; Mature: 64414

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLSVLKEETLKRFMDIFETSHEGLWEMGPDFQVNFLNRSFYNAFAVSTRGSNLKEWTA
CCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEECHHHHHHEEEECCCCCHHHHEE
LVHPDDVHLFTQKVEQQIDNMTTVVDSEYRVKNKVGEYIWIAAKSTSRFDPDGHLIYMAG
ECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEC
SHKDVTEEKENQHRLYQTAYIDPNTGLMNAHKLLQDLKDNFSQQAGALLFIKLINFNVYI
CCCCCCHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEE
DSYGTYAGHKIVRKLLNCLSELFIGDCQFYRQKSSEFVIRITKPVTSERIEKSIEQLLVI
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
FKHNGKDLKNNDIPNLSVGICMLPSSAECEKTLLHQVKLTMIYAHEHTDQQFAFFNEQIK
HCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHH
HIVKKRLHIKTAMKSALYNNEFLLKFQPIIQSKTKKVDSFEALIRWDSPVFGEIMPDEFI
HHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PAAEQNLNIIDIGYFVLEQACTFICRYHELNDRLVKIAINISGIQLLQHDFVDRVLSTVS
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
QFMLNNSDIVLEITESLLLDSNNFAKEQITRLRDKGFSVSMDDFGTGYSSLNNFFTLPFT
HHHHCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHCCCEEEHHHCCCCHHHHCCEEECCHH
QLKIDRQVVNQSMMTTEARAYIAFLIQLCQNKDIEVVAEGIETQEMSDAMKAIGVNLLQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
YLFSKPASAADALNICEYKF
HHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKQLSVLKEETLKRFMDIFETSHEGLWEMGPDFQVNFLNRSFYNAFAVSTRGSNLKEWTA
CCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEECHHHHHHEEEECCCCCHHHHEE
LVHPDDVHLFTQKVEQQIDNMTTVVDSEYRVKNKVGEYIWIAAKSTSRFDPDGHLIYMAG
ECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEC
SHKDVTEEKENQHRLYQTAYIDPNTGLMNAHKLLQDLKDNFSQQAGALLFIKLINFNVYI
CCCCCCHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEE
DSYGTYAGHKIVRKLLNCLSELFIGDCQFYRQKSSEFVIRITKPVTSERIEKSIEQLLVI
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
FKHNGKDLKNNDIPNLSVGICMLPSSAECEKTLLHQVKLTMIYAHEHTDQQFAFFNEQIK
HCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHH
HIVKKRLHIKTAMKSALYNNEFLLKFQPIIQSKTKKVDSFEALIRWDSPVFGEIMPDEFI
HHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PAAEQNLNIIDIGYFVLEQACTFICRYHELNDRLVKIAINISGIQLLQHDFVDRVLSTVS
CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
QFMLNNSDIVLEITESLLLDSNNFAKEQITRLRDKGFSVSMDDFGTGYSSLNNFFTLPFT
HHHHCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHCCCEEEHHHCCCCHHHHCCEEECCHH
QLKIDRQVVNQSMMTTEARAYIAFLIQLCQNKDIEVVAEGIETQEMSDAMKAIGVNLLQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
YLFSKPASAADALNICEYKF
HHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]