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The map label for this gene is ugpB [H]

Identifier: 119945760

GI number: 119945760

Start: 2548420

End: 2549727

Strand: Direct

Name: ugpB [H]

Synonym: Ping_2093

Alternate gene names: 119945760

Gene position: 2548420-2549727 (Clockwise)

Preceding gene: 119945756

Following gene: 119945761

Centisome position: 55.89

GC content: 43.27

Gene sequence:

>1308_bases
ATGTCTATTAAAAACCTCACTGGGTTGGCGGTAGCGGCAACGTTATTGAGTGCGCAAGTTCATGCTAAAACAGAGGTTGA
ATGGTGGCATGCAATGGGTGGAAATTTAGGCCAAAAAGTAAATGAAATTGCGGCTGATTTTAATAAAAGTCAATCCGAAT
ATGAAATCAAACCCGTTTATAAAGGCAGCTACGCTGAGACAATGACCAGTGCTATCGCCGCATTTCGAGCGCAGCAGCAA
CCCGCTATTGTGCAAGTCTTTGAAGTAGGTACCGCGACTATGATGGGGGCAGAGCAGGCTATTTATCCCATTCATGAATT
GATGAAAGAGACTAATGAGTCTTTTAATCCCAATAATTATTTATCCGCAGTGACCGGCTATTACACCACCAATGACGGAA
AAATGTTGTCCATGCCGTTTAATAGTTCGACCCCTGTTCTGTATTACAACAAAGCAATGTTTAAAAAAGCAGGTATAAAA
TCAGCACCCAAAACATGGCAAGAGATGGAAGATGTCTCTGTTAAGTTATTAGCCTCCGGTGCCCAATGCGGTTTTAGCAC
CACATGGCAGTCCTGGACACAAATCGAAAACTTTGGTGCCCGCAACAATATTGCGCTTGCGGATAACAGCAATGGATTTG
ATGGTTTAGACACTAAGTTTAAATTCAATAGCGCACCTTTTGTTGATCATATAGCACAAATGGCTGAGTGGTCAAAATCT
GGAATCTTTAAATACGGTGGCCGTCAATCAAAAGGTATGCCGTTGTTTTACACGCAGGAATGTGCAATGACCATGGGCTC
ATCTGCAGGGCTTGCCGGTATTCAAGAAAATATGAAAGATATTGACGTGGGTGTTGCCGAGCTTCCTTTTGATGACACGC
TTATTTCAACACCACAAAACACTATTATTGGCGGCGCTTCATTATGGGTGTTACGTGGACATTCAGACGAGCAATATAAA
GGAGTGGCTGAATTCTTTACTTACCTGTCAAGTCCGAAGGTGCAAGCAGATTGGCATCAGTTTACCGGATATTTACCTAT
TACTAAACAGGCGCACGCGCTAACGAAAAAGCAGGGATTCTATAAAACGCATCCTGGTACTGAGACAGCCGTTATTCAAA
TGACGTCAACCAAGCCTACCGTTAATTCCAAGGGAATTCGTTTTGGCAACTTTCTGCAAACACGTGACATTATCAACGAA
GAGTTAGAATCAGTCTGGTCTGGCGATCAATCGGCTCAAGTCGCACTGAATAATGCTGTGCGTCTTGGTAATGAGCAGTT
GAGACGCTTCGAACGTACTCAACAGTAG

Upstream 100 bases:

>100_bases
AACTTTCTTTATTCTTCAAATGAACATTAAATCAGTGGAGGGTGGACAAATAAAATCACTGCTCCTTTAAATAATAACTT
AATATGAGAAAGGAAATGAT

Downstream 100 bases:

>100_bases
ATGTCTTAATATTATATCGCCACTTTTGTTAAAAAGTGGTGATATTTTACTTCCTGACTATAAGTATCACTATCAACATG
ACTATAAAACTGTGGAACAT

Product: glycerol-3-phosphate ABC transporter extracellular solute-binding family 1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSIKNLTGLAVAATLLSAQVHAKTEVEWWHAMGGNLGQKVNEIAADFNKSQSEYEIKPVYKGSYAETMTSAIAAFRAQQQ
PAIVQVFEVGTATMMGAEQAIYPIHELMKETNESFNPNNYLSAVTGYYTTNDGKMLSMPFNSSTPVLYYNKAMFKKAGIK
SAPKTWQEMEDVSVKLLASGAQCGFSTTWQSWTQIENFGARNNIALADNSNGFDGLDTKFKFNSAPFVDHIAQMAEWSKS
GIFKYGGRQSKGMPLFYTQECAMTMGSSAGLAGIQENMKDIDVGVAELPFDDTLISTPQNTIIGGASLWVLRGHSDEQYK
GVAEFFTYLSSPKVQADWHQFTGYLPITKQAHALTKKQGFYKTHPGTETAVIQMTSTKPTVNSKGIRFGNFLQTRDIINE
ELESVWSGDQSAQVALNNAVRLGNEQLRRFERTQQ

Sequences:

>Translated_435_residues
MSIKNLTGLAVAATLLSAQVHAKTEVEWWHAMGGNLGQKVNEIAADFNKSQSEYEIKPVYKGSYAETMTSAIAAFRAQQQ
PAIVQVFEVGTATMMGAEQAIYPIHELMKETNESFNPNNYLSAVTGYYTTNDGKMLSMPFNSSTPVLYYNKAMFKKAGIK
SAPKTWQEMEDVSVKLLASGAQCGFSTTWQSWTQIENFGARNNIALADNSNGFDGLDTKFKFNSAPFVDHIAQMAEWSKS
GIFKYGGRQSKGMPLFYTQECAMTMGSSAGLAGIQENMKDIDVGVAELPFDDTLISTPQNTIIGGASLWVLRGHSDEQYK
GVAEFFTYLSSPKVQADWHQFTGYLPITKQAHALTKKQGFYKTHPGTETAVIQMTSTKPTVNSKGIRFGNFLQTRDIINE
ELESVWSGDQSAQVALNNAVRLGNEQLRRFERTQQ
>Mature_434_residues
SIKNLTGLAVAATLLSAQVHAKTEVEWWHAMGGNLGQKVNEIAADFNKSQSEYEIKPVYKGSYAETMTSAIAAFRAQQQP
AIVQVFEVGTATMMGAEQAIYPIHELMKETNESFNPNNYLSAVTGYYTTNDGKMLSMPFNSSTPVLYYNKAMFKKAGIKS
APKTWQEMEDVSVKLLASGAQCGFSTTWQSWTQIENFGARNNIALADNSNGFDGLDTKFKFNSAPFVDHIAQMAEWSKSG
IFKYGGRQSKGMPLFYTQECAMTMGSSAGLAGIQENMKDIDVGVAELPFDDTLISTPQNTIIGGASLWVLRGHSDEQYKG
VAEFFTYLSSPKVQADWHQFTGYLPITKQAHALTKKQGFYKTHPGTETAVIQMTSTKPTVNSKGIRFGNFLQTRDIINEE
LESVWSGDQSAQVALNNAVRLGNEQLRRFERTQQ

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=417, Percent_Identity=48.6810551558753, Blast_Score=418, Evalue=1e-118,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48103; Mature: 47971

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKNLTGLAVAATLLSAQVHAKTEVEWWHAMGGNLGQKVNEIAADFNKSQSEYEIKPVY
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEE
KGSYAETMTSAIAAFRAQQQPAIVQVFEVGTATMMGAEQAIYPIHELMKETNESFNPNNY
CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCH
LSAVTGYYTTNDGKMLSMPFNSSTPVLYYNKAMFKKAGIKSAPKTWQEMEDVSVKLLASG
HHHEECEEECCCCEEEEECCCCCCCEEEECHHHHHHCCCCCCCHHHHHHHHHEEEEEECC
AQCGFSTTWQSWTQIENFGARNNIALADNSNGFDGLDTKFKFNSAPFVDHIAQMAEWSKS
CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC
GIFKYGGRQSKGMPLFYTQECAMTMGSSAGLAGIQENMKDIDVGVAELPFDDTLISTPQN
CCEECCCCCCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCC
TIIGGASLWVLRGHSDEQYKGVAEFFTYLSSPKVQADWHQFTGYLPITKQAHALTKKQGF
CEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEECHHHHCCCCCCCHHHHHHHHHCCC
YKTHPGTETAVIQMTSTKPTVNSKGIRFGNFLQTRDIINEELESVWSGDQSAQVALNNAV
EECCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RLGNEQLRRFERTQQ
HCCHHHHHHHHHHCC
>Mature Secondary Structure 
SIKNLTGLAVAATLLSAQVHAKTEVEWWHAMGGNLGQKVNEIAADFNKSQSEYEIKPVY
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEE
KGSYAETMTSAIAAFRAQQQPAIVQVFEVGTATMMGAEQAIYPIHELMKETNESFNPNNY
CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCH
LSAVTGYYTTNDGKMLSMPFNSSTPVLYYNKAMFKKAGIKSAPKTWQEMEDVSVKLLASG
HHHEECEEECCCCEEEEECCCCCCCEEEECHHHHHHCCCCCCCHHHHHHHHHEEEEEECC
AQCGFSTTWQSWTQIENFGARNNIALADNSNGFDGLDTKFKFNSAPFVDHIAQMAEWSKS
CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHC
GIFKYGGRQSKGMPLFYTQECAMTMGSSAGLAGIQENMKDIDVGVAELPFDDTLISTPQN
CCEECCCCCCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCC
TIIGGASLWVLRGHSDEQYKGVAEFFTYLSSPKVQADWHQFTGYLPITKQAHALTKKQGF
CEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEECHHHHCCCCCCCHHHHHHHHHCCC
YKTHPGTETAVIQMTSTKPTVNSKGIRFGNFLQTRDIINEELESVWSGDQSAQVALNNAV
EECCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RLGNEQLRRFERTQQ
HCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA