| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is yciR [C]
Identifier: 119945756
GI number: 119945756
Start: 2540879
End: 2543590
Strand: Direct
Name: yciR [C]
Synonym: Ping_2088
Alternate gene names: 119945756
Gene position: 2540879-2543590 (Clockwise)
Preceding gene: 119945754
Following gene: 119945760
Centisome position: 55.73
GC content: 38.72
Gene sequence:
>2712_bases TTGTCTGATCCCATTAAAAATCTATTGTATCTTGGAGACAATATTGCCCTTATTGATACATTGTTTAACTCATTTTTTAC GGATGAAAAAACAGATAACTATCACGTTTTTCATTTAGTGAGTGGCGTGCAACTCTGCCTGACTTTATCGGAAAATAATT TTAGCCACTTCATATCAGAACGCCCCCTTAATACAGATATAAAAGATAAAATTAAAGCAGATTTTCCCTTGTTAAAGACA ACCTACCTGAATGCAGATGACGAGCCCAAAGAAACCAAGTTATCCGTTGACGTTGAAAATATTTTTACTGATGAGGTTAA AGCCCTCTTAGAATCTCTTAGTATTCCCATCTATTTTAAAAATAAACAAGCACAATATTTAGCCTGTAATCACCATTTTT CCAAGCTGTTAGGTCTCTCTCCCGCACAAATTATCGGGAAAACATTTGCTGAGCTATCTGACTCTCCTTTAAAGGATGAA ATCGAAAAGATAGATCCACAAATGTTTACTGATCATCAAGTTGGCTTGCATGAATATAGAGGGACTAATAAAGTGGGTGA AAAGCATGATCTTCTCTTTTATAACGAGTTCACCGCTAACGGAAAAATGCAAAGTGGACTTATTTTTGATATTACAGAGC TCAATAAGTCAAAATATTTATTAGAAAAACAGCGAAGGATACTGCGCGCGACGGTAGATATTTCTCCAGATATGATCTCT TATAAAGACTTAAAAAGTCGCATATTAGGCGGTAATAGTCCGTTTGAGAAATTTGTGGGTTCTTTGGAAAAGGAGGTTTT GGGTAAAACAGTGTATGATTTTTTCCCATTGGAACAAGCGATAGCGTCTATAAAGCACGACCAAAAAGTTATAAAAAATA ATAAAGTTAATGTACAGGAAGTCATTTCCACTGATGATGATGGCGAACGTCATTTGCTCAATATGAAAAAAATACCCGTG CAGGATAAACAGGGAGATGTACAAGGGTTAATTTCTGTTGGCCGGAATATGACCGAGCAGCGAAAGACACAGAAGCGCTT TGAGATTGCGGATGCTGTCTTTGAAAACAGTAAAGAGAGTCTGATCGTAACCGACGAGGATGGCAGGATAATTTCAGCCA ATGACCACGCTTGTATTGTTTTTGGTTATAGTAAAGAGCAATTATTGGCGCAAGAGATCAATATATTAGCTTCTGAGACC CATGATGGTGCATATTATAAAAATATTGAACAGCTTTTAGAAGCAGACGGTTCCTGGCAGGGAGATATCACCTACCGCAC CAAGATTGGTGATGTTTGTCACGCCTGGTTAGAGGCCTATGAGGTCCAGCACACGCAGGAAAACAGGGTTGAGCGAGTCT ATTCTTATACCGATTTAACGCACTTTCAAGTAACAGATAAAAAAATTAGCTTCTTATCAAAACAGGATCCGTTAACAGGA TTACATAATCGAATATCCCTGTTTAGCCGATTGGAAGATAGATTAACACGTGCGAATTATCAGCACAGCGCGGTGGCGGT TATATTAGTTGATATTGATGATTTTAAGGCGATTAATAATAAGTATGGGCATAATGGCGGTAATCAGATTTTAAAGGAGG TTGCTAGGCGTCTAAAAAACTGTCTTTATGGAAAATATACCCTGGGCCGTTTTGTTAAGGATCAATTTATTATTATCATT GACGAATTAGCCAGTGAACACGATGCAGCTACGGTTGCGCGTCAAGTAACAGATCAGTTTAGCAGCGCATTTATCATCGA AAACGTTCACAAAAATATTACCGCAAGTATCGGTATCAGTCTTTCTCCAGATGATGGGATTGAGGTTGCTCCCCTCTTTT TGAATGCTGAAAAAGCGAAGCGACATAGTAAAAACAGCAAAAGTACAGTATACAATTTTTATACCCCTGGCTTGACGCTT GGTTTGAATAAAGAGTTTGAATTAGAAAAAGAGCTAAAACAGGCATTATTGTCAGATCAGTTAGATTTGTATTACCAGCC GCAATACGATCTTAGTAAACGGCAAATCGTTGCGCTGCAAGGTTTACTGCGTTGGCATCACCCCAAGCGTGGAATATTAC TGCCAGAGCACTTTTTGAGTGTGGCTGAAGGCAGCCATTTGTTAGTCCCCATTGGTTGGAAAATGATCCGTAAAGCCTGC TTAAAAGCGGTTTCCTGGGAAAATGCTCAGTTTAAATTTGGCCGGATTGCTATTGATCTATTCAAAATACAATTATCACA AATTAGCTTTATTGCGGAGCTACAAACTATTTTAAAAGAAACGGGCTGTTCAACCGGGCAGCTTGAATTTCTGGTTGATA AGGCGATTCTTTGCGACGCCTCAGCAGATATTCTGTCGAATCTGGATAATGCTAATAAGATGGGATTTACACTGACCGTG ACCAATTTTGGCATGGCCGAGGATGTTATCGATTTAATTGATCGGCTGGGCGTTGCAAACTTAAAAATATCAGACCCGCA GATTAAAAATGCTTCAGGATCCTTAGCGAATAACGCACAATTAAAATCCGCTAATGTTTTTGCGAGCAGCTTAGGTATTA ATATCCTTAGTGATACTCTGGACAATGCCGAACAGAAAGAATTTTCAACCTTCAATCGGCCCGATTCCGGAAAAGCAAAG GTTGTTGTTCATAAAAAAGTAATGAGCGCCTCTGAGGCGACCTTTTACCTGCATTGTAATAAACATAGATAA
Upstream 100 bases:
>100_bases CATCGGCTATCAATCAACACACTCGAGCCTGAGTTTCCGAACCATCCATGACTATAAGCAGACGTTACTCACGTAGCATT TTTATATAAGGAGGTTATTT
Downstream 100 bases:
>100_bases TGATTATATTTAAAATTAGCTTTCTCGTTATATAGGCTTGATCGCTATCGCACACTGGCATGGTGCTCCTTATCTATGCT TAACTAAATCAATTCTGTTT
Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 903; Mature: 902
Protein sequence:
>903_residues MSDPIKNLLYLGDNIALIDTLFNSFFTDEKTDNYHVFHLVSGVQLCLTLSENNFSHFISERPLNTDIKDKIKADFPLLKT TYLNADDEPKETKLSVDVENIFTDEVKALLESLSIPIYFKNKQAQYLACNHHFSKLLGLSPAQIIGKTFAELSDSPLKDE IEKIDPQMFTDHQVGLHEYRGTNKVGEKHDLLFYNEFTANGKMQSGLIFDITELNKSKYLLEKQRRILRATVDISPDMIS YKDLKSRILGGNSPFEKFVGSLEKEVLGKTVYDFFPLEQAIASIKHDQKVIKNNKVNVQEVISTDDDGERHLLNMKKIPV QDKQGDVQGLISVGRNMTEQRKTQKRFEIADAVFENSKESLIVTDEDGRIISANDHACIVFGYSKEQLLAQEINILASET HDGAYYKNIEQLLEADGSWQGDITYRTKIGDVCHAWLEAYEVQHTQENRVERVYSYTDLTHFQVTDKKISFLSKQDPLTG LHNRISLFSRLEDRLTRANYQHSAVAVILVDIDDFKAINNKYGHNGGNQILKEVARRLKNCLYGKYTLGRFVKDQFIIII DELASEHDAATVARQVTDQFSSAFIIENVHKNITASIGISLSPDDGIEVAPLFLNAEKAKRHSKNSKSTVYNFYTPGLTL GLNKEFELEKELKQALLSDQLDLYYQPQYDLSKRQIVALQGLLRWHHPKRGILLPEHFLSVAEGSHLLVPIGWKMIRKAC LKAVSWENAQFKFGRIAIDLFKIQLSQISFIAELQTILKETGCSTGQLEFLVDKAILCDASADILSNLDNANKMGFTLTV TNFGMAEDVIDLIDRLGVANLKISDPQIKNASGSLANNAQLKSANVFASSLGINILSDTLDNAEQKEFSTFNRPDSGKAK VVVHKKVMSASEATFYLHCNKHR
Sequences:
>Translated_903_residues MSDPIKNLLYLGDNIALIDTLFNSFFTDEKTDNYHVFHLVSGVQLCLTLSENNFSHFISERPLNTDIKDKIKADFPLLKT TYLNADDEPKETKLSVDVENIFTDEVKALLESLSIPIYFKNKQAQYLACNHHFSKLLGLSPAQIIGKTFAELSDSPLKDE IEKIDPQMFTDHQVGLHEYRGTNKVGEKHDLLFYNEFTANGKMQSGLIFDITELNKSKYLLEKQRRILRATVDISPDMIS YKDLKSRILGGNSPFEKFVGSLEKEVLGKTVYDFFPLEQAIASIKHDQKVIKNNKVNVQEVISTDDDGERHLLNMKKIPV QDKQGDVQGLISVGRNMTEQRKTQKRFEIADAVFENSKESLIVTDEDGRIISANDHACIVFGYSKEQLLAQEINILASET HDGAYYKNIEQLLEADGSWQGDITYRTKIGDVCHAWLEAYEVQHTQENRVERVYSYTDLTHFQVTDKKISFLSKQDPLTG LHNRISLFSRLEDRLTRANYQHSAVAVILVDIDDFKAINNKYGHNGGNQILKEVARRLKNCLYGKYTLGRFVKDQFIIII DELASEHDAATVARQVTDQFSSAFIIENVHKNITASIGISLSPDDGIEVAPLFLNAEKAKRHSKNSKSTVYNFYTPGLTL GLNKEFELEKELKQALLSDQLDLYYQPQYDLSKRQIVALQGLLRWHHPKRGILLPEHFLSVAEGSHLLVPIGWKMIRKAC LKAVSWENAQFKFGRIAIDLFKIQLSQISFIAELQTILKETGCSTGQLEFLVDKAILCDASADILSNLDNANKMGFTLTV TNFGMAEDVIDLIDRLGVANLKISDPQIKNASGSLANNAQLKSANVFASSLGINILSDTLDNAEQKEFSTFNRPDSGKAK VVVHKKVMSASEATFYLHCNKHR >Mature_902_residues SDPIKNLLYLGDNIALIDTLFNSFFTDEKTDNYHVFHLVSGVQLCLTLSENNFSHFISERPLNTDIKDKIKADFPLLKTT YLNADDEPKETKLSVDVENIFTDEVKALLESLSIPIYFKNKQAQYLACNHHFSKLLGLSPAQIIGKTFAELSDSPLKDEI EKIDPQMFTDHQVGLHEYRGTNKVGEKHDLLFYNEFTANGKMQSGLIFDITELNKSKYLLEKQRRILRATVDISPDMISY KDLKSRILGGNSPFEKFVGSLEKEVLGKTVYDFFPLEQAIASIKHDQKVIKNNKVNVQEVISTDDDGERHLLNMKKIPVQ DKQGDVQGLISVGRNMTEQRKTQKRFEIADAVFENSKESLIVTDEDGRIISANDHACIVFGYSKEQLLAQEINILASETH DGAYYKNIEQLLEADGSWQGDITYRTKIGDVCHAWLEAYEVQHTQENRVERVYSYTDLTHFQVTDKKISFLSKQDPLTGL HNRISLFSRLEDRLTRANYQHSAVAVILVDIDDFKAINNKYGHNGGNQILKEVARRLKNCLYGKYTLGRFVKDQFIIIID ELASEHDAATVARQVTDQFSSAFIIENVHKNITASIGISLSPDDGIEVAPLFLNAEKAKRHSKNSKSTVYNFYTPGLTLG LNKEFELEKELKQALLSDQLDLYYQPQYDLSKRQIVALQGLLRWHHPKRGILLPEHFLSVAEGSHLLVPIGWKMIRKACL KAVSWENAQFKFGRIAIDLFKIQLSQISFIAELQTILKETGCSTGQLEFLVDKAILCDASADILSNLDNANKMGFTLTVT NFGMAEDVIDLIDRLGVANLKISDPQIKNASGSLANNAQLKSANVFASSLGINILSDTLDNAEQKEFSTFNRPDSGKAKV VVHKKVMSASEATFYLHCNKHR
Specific function: Unknown
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=524, Percent_Identity=21.3740458015267, Blast_Score=161, Evalue=2e-40, Organism=Escherichia coli, GI87081921, Length=598, Percent_Identity=22.5752508361204, Blast_Score=123, Evalue=5e-29, Organism=Escherichia coli, GI1788381, Length=369, Percent_Identity=23.5772357723577, Blast_Score=93, Evalue=8e-20, Organism=Escherichia coli, GI226510982, Length=398, Percent_Identity=20.1005025125628, Blast_Score=77, Evalue=5e-15, Organism=Escherichia coli, GI48994928, Length=144, Percent_Identity=29.8611111111111, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI87082007, Length=150, Percent_Identity=28.6666666666667, Blast_Score=69, Evalue=2e-12, Organism=Escherichia coli, GI1788956, Length=129, Percent_Identity=29.4573643410853, Blast_Score=68, Evalue=3e-12, Organism=Escherichia coli, GI1786584, Length=146, Percent_Identity=24.6575342465753, Blast_Score=68, Evalue=3e-12, Organism=Escherichia coli, GI1787055, Length=333, Percent_Identity=21.6216216216216, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI87081881, Length=253, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=3e-11, Organism=Escherichia coli, GI87081977, Length=149, Percent_Identity=28.8590604026846, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR005330 - InterPro: IPR000014 - InterPro: IPR013767 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]
EC number: NA
Molecular weight: Translated: 102041; Mature: 101910
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPIKNLLYLGDNIALIDTLFNSFFTDEKTDNYHVFHLVSGVQLCLTLSENNFSHFISE CCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHC RPLNTDIKDKIKADFPLLKTTYLNADDEPKETKLSVDVENIFTDEVKALLESLSIPIYFK CCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEC NKQAQYLACNHHFSKLLGLSPAQIIGKTFAELSDSPLKDEIEKIDPQMFTDHQVGLHEYR CCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHCCCCCCCHHHHC GTNKVGEKHDLLFYNEFTANGKMQSGLIFDITELNKSKYLLEKQRRILRATVDISPDMIS CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC YKDLKSRILGGNSPFEKFVGSLEKEVLGKTVYDFFPLEQAIASIKHDQKVIKNNKVNVQE HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH VISTDDDGERHLLNMKKIPVQDKQGDVQGLISVGRNMTEQRKTQKRFEIADAVFENSKES HHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCE LIVTDEDGRIISANDHACIVFGYSKEQLLAQEINILASETHDGAYYKNIEQLLEADGSWQ EEEECCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC GDITYRTKIGDVCHAWLEAYEVQHTQENRVERVYSYTDLTHFQVTDKKISFLSKQDPLTG CCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCHH LHNRISLFSRLEDRLTRANYQHSAVAVILVDIDDFKAINNKYGHNGGNQILKEVARRLKN HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHH CLYGKYTLGRFVKDQFIIIIDELASEHDAATVARQVTDQFSSAFIIENVHKNITASIGIS HHCCCHHHHHHHCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE LSPDDGIEVAPLFLNAEKAKRHSKNSKSTVYNFYTPGLTLGLNKEFELEKELKQALLSDQ ECCCCCCEEEEEEEEHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHCCC LDLYYQPQYDLSKRQIVALQGLLRWHHPKRGILLPEHFLSVAEGSHLLVPIGWKMIRKAC CCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHH LKAVSWENAQFKFGRIAIDLFKIQLSQISFIAELQTILKETGCSTGQLEFLVDKAILCDA HHHHCCCCCCEEEHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC SADILSNLDNANKMGFTLTVTNFGMAEDVIDLIDRLGVANLKISDPQIKNASGSLANNAQ CHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC LKSANVFASSLGINILSDTLDNAEQKEFSTFNRPDSGKAKVVVHKKVMSASEATFYLHCN CCHHHHHHHHHCCHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEEHHHHCCCCEEEEEEEC KHR CCC >Mature Secondary Structure SDPIKNLLYLGDNIALIDTLFNSFFTDEKTDNYHVFHLVSGVQLCLTLSENNFSHFISE CCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHHHC RPLNTDIKDKIKADFPLLKTTYLNADDEPKETKLSVDVENIFTDEVKALLESLSIPIYFK CCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEC NKQAQYLACNHHFSKLLGLSPAQIIGKTFAELSDSPLKDEIEKIDPQMFTDHQVGLHEYR CCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHCCCCCCCHHHHC GTNKVGEKHDLLFYNEFTANGKMQSGLIFDITELNKSKYLLEKQRRILRATVDISPDMIS CCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC YKDLKSRILGGNSPFEKFVGSLEKEVLGKTVYDFFPLEQAIASIKHDQKVIKNNKVNVQE HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH VISTDDDGERHLLNMKKIPVQDKQGDVQGLISVGRNMTEQRKTQKRFEIADAVFENSKES HHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCE LIVTDEDGRIISANDHACIVFGYSKEQLLAQEINILASETHDGAYYKNIEQLLEADGSWQ EEEECCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC GDITYRTKIGDVCHAWLEAYEVQHTQENRVERVYSYTDLTHFQVTDKKISFLSKQDPLTG CCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCHH LHNRISLFSRLEDRLTRANYQHSAVAVILVDIDDFKAINNKYGHNGGNQILKEVARRLKN HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHH CLYGKYTLGRFVKDQFIIIIDELASEHDAATVARQVTDQFSSAFIIENVHKNITASIGIS HHCCCHHHHHHHCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE LSPDDGIEVAPLFLNAEKAKRHSKNSKSTVYNFYTPGLTLGLNKEFELEKELKQALLSDQ ECCCCCCEEEEEEEEHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHCCC LDLYYQPQYDLSKRQIVALQGLLRWHHPKRGILLPEHFLSVAEGSHLLVPIGWKMIRKAC CCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHH LKAVSWENAQFKFGRIAIDLFKIQLSQISFIAELQTILKETGCSTGQLEFLVDKAILCDA HHHHCCCCCCEEEHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC SADILSNLDNANKMGFTLTVTNFGMAEDVIDLIDRLGVANLKISDPQIKNASGSLANNAQ CHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC LKSANVFASSLGINILSDTLDNAEQKEFSTFNRPDSGKAKVVVHKKVMSASEATFYLHCN CCHHHHHHHHHCCHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEEHHHHCCCCEEEEEEEC KHR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]