| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is uvrA [H]
Identifier: 119945754
GI number: 119945754
Start: 2535838
End: 2538393
Strand: Direct
Name: uvrA [H]
Synonym: Ping_2085
Alternate gene names: 119945754
Gene position: 2535838-2538393 (Clockwise)
Preceding gene: 119945753
Following gene: 119945756
Centisome position: 55.62
GC content: 60.02
Gene sequence:
>2556_bases ATGAAAAAAAGAAGTAATATCGGCATTCTTCGTTTGCCAGTTGACACTTTCCTTCGCCACATCCCCGATTCAGCATCCGT TTCGCACACAACGCTCAACAGTTTTGTGCGTGTGCGCGGTGCCCGGGAGAACAATCTGCAGAACGTCGACGTGGATCTGC CCCGGGACGCGATAGTCGCCTTCACCGGGGTGTCCGGCTCAGGCAAATCCTCCCTCGCCTTCGGCACAATTTTTGCTGAG GCCCAGCGACGCTTTTTCGAGTCCGTCGCGCCGTACGCCCGGCGCTTGATCCAGCAGGGCCACACGCCCCGAGTAGATGA AATCACCGGCCTTCCGCCTGCCGTCGCGCTGCAGCAGCGCAGGGGAACACCCAGCTCTCGCTCAAGCGTGGGAACCGTCA CCACTCTCTCAAACTCCCTGCGGATGCTTTATTCCCGCACCGGTCTATATCCTGATGGTGCACCCCGCCTGGAGTCGGAC TCCTTTTCACCAAACACCGCCATGGGTGCCTGCCCAACATGCCAGGGACTTGGAACAGCGCATACTGTCACCGAGGCATC GCTGGTGCTCGACCCTTCGCTGAGCATCAGTGAAGGTGCTATTACGGCCTGGCCCGGGGCGTGGCAGGGCAAGAACCTGC GCGACATCCTCAGCGTGCTCGGCTATGACGTGGACACCGCCTGGAACCAGCTTTCCCGCACTGACCGCGACTGGATCCTG TTCACCGAGGAACAACCTGTGGTCGAGATCATGCCGGTGCGGGAACGACCTAGGCCCTACAAAGGAAAGTTCTGGAGCGC TAAGAGTTATGTAATGCACACACTCGCTGACTCAAAGAGTGCCTCGGTGCGTAAGCGTGTGCTCAAGTATGTTAAATCGG GCCCGTGTCTTATCTGCGCGGGAAGCGGGCTGCGCAGCGAAGCACTTGCGGTTACTTTCAATGGCCACACCATCGCCGAT CTGAACGCCCTGCCGCTCACCGAGCTGCGCCACGCGTTCGACTATCTGGGAGTCGCCAACACTGCAAGTGACACAATCAC CAGCGACCTTACTCGCCGTCTTGATGTACTGCTCGATCTTGGCCTTGGATACCTGAGCCTGGGCCGCGCGACGCCCACAC TCTCACCCGGTGAAATGCAGCGTCTGCGCATCGCAACCCAGTTGCGCGCCGGGCTGTTTGGTGTGATCTATGTACTCGAT GAGCCTTCCGCGGGACTGCACCCGGCCGATGCCGAGCCGCTCCTCGCTGTACTCGAAGAGCTGAAGTCCAGCGGCAATTC CGTTTTTGTCGTGGAGCACAATATGGACGTTGTACGCCGTGCAGACTGGGTGATCGACGTTGGCCCTCTCGCGGGGGAGC ACGGTGGGAAAGTACTCTACAGTGGACCAACGGCCGGACTTGCAGATGTACCCGCCTCCATCACAAGGGAGTTTCTCTTC GCAAATGAGCGCCCAATTCCGGCCACACGCGCACTGCGGGATCCCATTGGCTGGCTCGGCCTGACGGGCATTACCCGTCA TAACCTGCGCGGTATCGACGCTGAATTTCCGCTCGGCGTGCTGACGGCGGTCACCGGCGTTTCAGGCTCAGGTAAATCTA CCCTGGTAAGCCAGGTACTCGCCGAGGCCGTTGGCCTGCACCTTCACCCTGACGAAGATCCCATTGCAGGAACCGCATCT ACTGGCTCGGCGACCGGAGAGAAGGACGATCAGTCCGAGCCTAAACCCGTCGAAATCACCACGGTCAAGGCGATTACCGG GGCAGAGCCTATCAACCGTCTGGTGCGCGTTGATCAGAAGCCAATTGGTCGTACTCCACGCTCCAATCTCGCCACCTATA CTGGCCTGTTCGATGCGGTGCGGACAACGTTCGCCGCGATTCCCGAGGCGCGAAGTCGAAAATTCAGCCCTAGCCGGTTC TCGTTCAATGTACCGGGTGGTCGCTGCGAGACCTGCCTTGGCGAGGGATTCGTTGCGGTTGGCCTTCTCTTTCTGCCGGG CAGTTACTCGCCCTGCCCCGATTGCGGTGGCTCGCGATACAATCCTGAGACGCTCGAAGTGACATACCGCAATAAGAATA TAGCCGAAGTGCTTGAACTCACAGTGGATGCGGCAGTGGTATTCCTCGCCGATGTGCCCTCGGCACTGCGCAGTCTTGAA ACCCTTAGCGAGGTGGGCCTTGGTTATCTGCGACTCGGTCAGCCCGCCACCGAGCTTTCCGGGGGCGAGGCACAGCGCAT CAAGCTTGCGACCGAGCTGCAACGGGCGCGCCGCGGGCACACCCTATACGTGCTGGATGAGCCCACCACCGGGCTGCACC CCGCCGATGTGCTGCTGCTCCTCACCCAGCTCAACCGGCTTGTCGATGCGGGCAATACAGTGATCGTGGTTGAACACGAT ATGGACGTGGTTTCTGCCGCTGATTGGGTGATCGATATTGGTCCAGCGGGTGGTGATAAAGGAGGCCACATTGTGGCTGC CGGTACTCCCCACACTGTGGCCGTCCACCCCGCGAGCCGAACCGCACCCTATCTGGCTCGATGCGTATCAACCTGA
Upstream 100 bases:
>100_bases CATTTTTAAATGCAGCCTAACAAGTTATAATCACATGTTATAAATGGCAAATTCCGCTAGCGCCATATTGTTCCAGTACA GTTACAAGGGGTCTTTAATA
Downstream 100 bases:
>100_bases TTTTACGCCATGGTAAATTCAGGATATTTACCATGCCTGCAGCGTTTGTGAACCGAGCGCGAAATATTTTTATCAGTGTG TGGAGAGGCTCTGTTCAATG
Product: excinuclease ABC, A subunit
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 851; Mature: 851
Protein sequence:
>851_residues MKKRSNIGILRLPVDTFLRHIPDSASVSHTTLNSFVRVRGARENNLQNVDVDLPRDAIVAFTGVSGSGKSSLAFGTIFAE AQRRFFESVAPYARRLIQQGHTPRVDEITGLPPAVALQQRRGTPSSRSSVGTVTTLSNSLRMLYSRTGLYPDGAPRLESD SFSPNTAMGACPTCQGLGTAHTVTEASLVLDPSLSISEGAITAWPGAWQGKNLRDILSVLGYDVDTAWNQLSRTDRDWIL FTEEQPVVEIMPVRERPRPYKGKFWSAKSYVMHTLADSKSASVRKRVLKYVKSGPCLICAGSGLRSEALAVTFNGHTIAD LNALPLTELRHAFDYLGVANTASDTITSDLTRRLDVLLDLGLGYLSLGRATPTLSPGEMQRLRIATQLRAGLFGVIYVLD EPSAGLHPADAEPLLAVLEELKSSGNSVFVVEHNMDVVRRADWVIDVGPLAGEHGGKVLYSGPTAGLADVPASITREFLF ANERPIPATRALRDPIGWLGLTGITRHNLRGIDAEFPLGVLTAVTGVSGSGKSTLVSQVLAEAVGLHLHPDEDPIAGTAS TGSATGEKDDQSEPKPVEITTVKAITGAEPINRLVRVDQKPIGRTPRSNLATYTGLFDAVRTTFAAIPEARSRKFSPSRF SFNVPGGRCETCLGEGFVAVGLLFLPGSYSPCPDCGGSRYNPETLEVTYRNKNIAEVLELTVDAAVVFLADVPSALRSLE TLSEVGLGYLRLGQPATELSGGEAQRIKLATELQRARRGHTLYVLDEPTTGLHPADVLLLLTQLNRLVDAGNTVIVVEHD MDVVSAADWVIDIGPAGGDKGGHIVAAGTPHTVAVHPASRTAPYLARCVST
Sequences:
>Translated_851_residues MKKRSNIGILRLPVDTFLRHIPDSASVSHTTLNSFVRVRGARENNLQNVDVDLPRDAIVAFTGVSGSGKSSLAFGTIFAE AQRRFFESVAPYARRLIQQGHTPRVDEITGLPPAVALQQRRGTPSSRSSVGTVTTLSNSLRMLYSRTGLYPDGAPRLESD SFSPNTAMGACPTCQGLGTAHTVTEASLVLDPSLSISEGAITAWPGAWQGKNLRDILSVLGYDVDTAWNQLSRTDRDWIL FTEEQPVVEIMPVRERPRPYKGKFWSAKSYVMHTLADSKSASVRKRVLKYVKSGPCLICAGSGLRSEALAVTFNGHTIAD LNALPLTELRHAFDYLGVANTASDTITSDLTRRLDVLLDLGLGYLSLGRATPTLSPGEMQRLRIATQLRAGLFGVIYVLD EPSAGLHPADAEPLLAVLEELKSSGNSVFVVEHNMDVVRRADWVIDVGPLAGEHGGKVLYSGPTAGLADVPASITREFLF ANERPIPATRALRDPIGWLGLTGITRHNLRGIDAEFPLGVLTAVTGVSGSGKSTLVSQVLAEAVGLHLHPDEDPIAGTAS TGSATGEKDDQSEPKPVEITTVKAITGAEPINRLVRVDQKPIGRTPRSNLATYTGLFDAVRTTFAAIPEARSRKFSPSRF SFNVPGGRCETCLGEGFVAVGLLFLPGSYSPCPDCGGSRYNPETLEVTYRNKNIAEVLELTVDAAVVFLADVPSALRSLE TLSEVGLGYLRLGQPATELSGGEAQRIKLATELQRARRGHTLYVLDEPTTGLHPADVLLLLTQLNRLVDAGNTVIVVEHD MDVVSAADWVIDIGPAGGDKGGHIVAAGTPHTVAVHPASRTAPYLARCVST >Mature_851_residues MKKRSNIGILRLPVDTFLRHIPDSASVSHTTLNSFVRVRGARENNLQNVDVDLPRDAIVAFTGVSGSGKSSLAFGTIFAE AQRRFFESVAPYARRLIQQGHTPRVDEITGLPPAVALQQRRGTPSSRSSVGTVTTLSNSLRMLYSRTGLYPDGAPRLESD SFSPNTAMGACPTCQGLGTAHTVTEASLVLDPSLSISEGAITAWPGAWQGKNLRDILSVLGYDVDTAWNQLSRTDRDWIL FTEEQPVVEIMPVRERPRPYKGKFWSAKSYVMHTLADSKSASVRKRVLKYVKSGPCLICAGSGLRSEALAVTFNGHTIAD LNALPLTELRHAFDYLGVANTASDTITSDLTRRLDVLLDLGLGYLSLGRATPTLSPGEMQRLRIATQLRAGLFGVIYVLD EPSAGLHPADAEPLLAVLEELKSSGNSVFVVEHNMDVVRRADWVIDVGPLAGEHGGKVLYSGPTAGLADVPASITREFLF ANERPIPATRALRDPIGWLGLTGITRHNLRGIDAEFPLGVLTAVTGVSGSGKSTLVSQVLAEAVGLHLHPDEDPIAGTAS TGSATGEKDDQSEPKPVEITTVKAITGAEPINRLVRVDQKPIGRTPRSNLATYTGLFDAVRTTFAAIPEARSRKFSPSRF SFNVPGGRCETCLGEGFVAVGLLFLPGSYSPCPDCGGSRYNPETLEVTYRNKNIAEVLELTVDAAVVFLADVPSALRSLE TLSEVGLGYLRLGQPATELSGGEAQRIKLATELQRARRGHTLYVLDEPTTGLHPADVLLLLTQLNRLVDAGNTVIVVEHD MDVVSAADWVIDIGPAGGDKGGHIVAAGTPHTVAVHPASRTAPYLARCVST
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=705, Percent_Identity=42.1276595744681, Blast_Score=533, Evalue=1e-152,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017871 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91151; Mature: 91151
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: PS00626 RCC1_2 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKRSNIGILRLPVDTFLRHIPDSASVSHTTLNSFVRVRGARENNLQNVDVDLPRDAIVA CCCCCCCCEEEECHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE FTGVSGSGKSSLAFGTIFAEAQRRFFESVAPYARRLIQQGHTPRVDEITGLPPAVALQQR EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHH RGTPSSRSSVGTVTTLSNSLRMLYSRTGLYPDGAPRLESDSFSPNTAMGACPTCQGLGTA CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH HTVTEASLVLDPSLSISEGAITAWPGAWQGKNLRDILSVLGYDVDTAWNQLSRTDRDWIL HHHEEEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEE FTEEQPVVEIMPVRERPRPYKGKFWSAKSYVMHTLADSKSASVRKRVLKYVKSGPCLICA EECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEE GSGLRSEALAVTFNGHTIADLNALPLTELRHAFDYLGVANTASDTITSDLTRRLDVLLDL CCCCCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH GLGYLSLGRATPTLSPGEMQRLRIATQLRAGLFGVIYVLDEPSAGLHPADAEPLLAVLEE CCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCHHHHHHHH LKSSGNSVFVVEHNMDVVRRADWVIDVGPLAGEHGGKVLYSGPTAGLADVPASITREFLF HHCCCCEEEEEECCCHHHHHCCCEEECCCCCCCCCCEEEECCCCCCHHHCCHHHHHHHHH ANERPIPATRALRDPIGWLGLTGITRHNLRGIDAEFPLGVLTAVTGVSGSGKSTLVSQVL CCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH AEAVGLHLHPDEDPIAGTASTGSATGEKDDQSEPKPVEITTVKAITGAEPINRLVRVDQK HHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCC PIGRTPRSNLATYTGLFDAVRTTFAAIPEARSRKFSPSRFSFNVPGGRCETCLGEGFVAV CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCHHHHHHCCCHHHH GLLFLPGSYSPCPDCGGSRYNPETLEVTYRNKNIAEVLELTVDAAVVFLADVPSALRSLE HHHEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TLSEVGLGYLRLGQPATELSGGEAQRIKLATELQRARRGHTLYVLDEPTTGLHPADVLLL HHHHCCCCEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH LTQLNRLVDAGNTVIVVEHDMDVVSAADWVIDIGPAGGDKGGHIVAAGTPHTVAVHPASR HHHHHHHHHCCCEEEEEECCCCHHHHCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCC TAPYLARCVST CHHHHHHHHCC >Mature Secondary Structure MKKRSNIGILRLPVDTFLRHIPDSASVSHTTLNSFVRVRGARENNLQNVDVDLPRDAIVA CCCCCCCCEEEECHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE FTGVSGSGKSSLAFGTIFAEAQRRFFESVAPYARRLIQQGHTPRVDEITGLPPAVALQQR EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHH RGTPSSRSSVGTVTTLSNSLRMLYSRTGLYPDGAPRLESDSFSPNTAMGACPTCQGLGTA CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH HTVTEASLVLDPSLSISEGAITAWPGAWQGKNLRDILSVLGYDVDTAWNQLSRTDRDWIL HHHEEEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEE FTEEQPVVEIMPVRERPRPYKGKFWSAKSYVMHTLADSKSASVRKRVLKYVKSGPCLICA EECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEE GSGLRSEALAVTFNGHTIADLNALPLTELRHAFDYLGVANTASDTITSDLTRRLDVLLDL CCCCCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH GLGYLSLGRATPTLSPGEMQRLRIATQLRAGLFGVIYVLDEPSAGLHPADAEPLLAVLEE CCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCHHHHHHHH LKSSGNSVFVVEHNMDVVRRADWVIDVGPLAGEHGGKVLYSGPTAGLADVPASITREFLF HHCCCCEEEEEECCCHHHHHCCCEEECCCCCCCCCCEEEECCCCCCHHHCCHHHHHHHHH ANERPIPATRALRDPIGWLGLTGITRHNLRGIDAEFPLGVLTAVTGVSGSGKSTLVSQVL CCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH AEAVGLHLHPDEDPIAGTASTGSATGEKDDQSEPKPVEITTVKAITGAEPINRLVRVDQK HHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCC PIGRTPRSNLATYTGLFDAVRTTFAAIPEARSRKFSPSRFSFNVPGGRCETCLGEGFVAV CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCHHHHHHCCCHHHH GLLFLPGSYSPCPDCGGSRYNPETLEVTYRNKNIAEVLELTVDAAVVFLADVPSALRSLE HHHEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TLSEVGLGYLRLGQPATELSGGEAQRIKLATELQRARRGHTLYVLDEPTTGLHPADVLLL HHHHCCCCEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH LTQLNRLVDAGNTVIVVEHDMDVVSAADWVIDIGPAGGDKGGHIVAAGTPHTVAVHPASR HHHHHHHHHCCCEEEEEECCCCHHHHCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCC TAPYLARCVST CHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8269961 [H]