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The map label for this gene is cmpR [H]

Identifier: 119945721

GI number: 119945721

Start: 2492792

End: 2493736

Strand: Reverse

Name: cmpR [H]

Synonym: Ping_2047

Alternate gene names: 119945721

Gene position: 2493736-2492792 (Counterclockwise)

Preceding gene: 119945725

Following gene: 119945720

Centisome position: 54.69

GC content: 40.53

Gene sequence:

>945_bases
ATGCAATCACGTCTTCATGCCCATGTTGGCACAATGAGGCAGCTCGAAATTTTATTGGCGGTGCATGATAAAGGCAGTAT
TAATGAAGCTGCAAAAGCGCTTTTTTTAACTCAACCCACTGTTTCAATTCAGATGCGCAAACTCAGCGATGCGATTGGTG
AGCCTTTGTATCAATTCATAAACCGTAAGTTGATTTTTACTGATGTTGGTTTAGAGCTAGTGAAAACTGCTGTAGAGGTG
CTTGATAGTTTTGCTCGTTTAGATATGGCATTAGGATATATACGTAAGTTTAAATCTGGTACCTTGCGCTTGGCCGTGGT
GACAACCTCCAAGTATTTTATTCCTCACCTTTTAGGGCCTTTTTGTGAGCAATTTCCCGATATAGATATCCAGTTAAATA
TTGGCAATAGGGAGAAAACGATTGAACGGATGAAACAAGGCGTGGATGATTTTTATGTATTTAGTCATCCGCCTCAGGAT
ATTGATGCGCAAAGCCTAGAGTTGTTAGATAACCCTTTAGTGGCGATTGCCCATCAAGACCATCCTTTAGGTAAACAGGC
GTCAATTAGTTTGGCAGATCTGTGTGAGGTGCCCTTTTTAATGCGGGAGAAAGGCTCAGGTACCCGTTACGCTATTGAGG
CTTTGTTTAAACAGCATAAGTTACAACCGAATATAAAAATGACCATTGAAAGTAACGAGGCGATTAAACATGCCGTTATG
TCTAAATTAGGGATCTCTATTATTTCTGCTCACACACTTACCTATGGTGGGCAAAGCGGATTAGTGCGCTTACCTGTAAA
AGAGTTGCCAATAGATTCTCATTGGTTTTTTATGTGGTCAACATCTAAACGACCCACTTTAATCGCTTCTGCCTTTTTAA
AACATATTGAATCGAACGGCAGGGAATTGCTGCAAGATGAACTTGATAAAAGTGGTCTGGGTTAA

Upstream 100 bases:

>100_bases
ATCTAATTGCAATATAGATTATTATCTATTGTAGAGTGCATGGCCGATCCCAAGTGGTTGGAAAACACCAACGGGTTAGA
CAAACAACAGAGGAAGTATT

Downstream 100 bases:

>100_bases
TATTTACTCCTATAAAATAGCTGTATTAATGTGCGGAGGCATCTATCCTCTAACTCGTTCGGTTATAACAGCTGGCGCAC
TTTCGTGCTTTTTCCCCGAT

Product: transcriptional regulator, substrate-binding of LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MQSRLHAHVGTMRQLEILLAVHDKGSINEAAKALFLTQPTVSIQMRKLSDAIGEPLYQFINRKLIFTDVGLELVKTAVEV
LDSFARLDMALGYIRKFKSGTLRLAVVTTSKYFIPHLLGPFCEQFPDIDIQLNIGNREKTIERMKQGVDDFYVFSHPPQD
IDAQSLELLDNPLVAIAHQDHPLGKQASISLADLCEVPFLMREKGSGTRYAIEALFKQHKLQPNIKMTIESNEAIKHAVM
SKLGISIISAHTLTYGGQSGLVRLPVKELPIDSHWFFMWSTSKRPTLIASAFLKHIESNGRELLQDELDKSGLG

Sequences:

>Translated_314_residues
MQSRLHAHVGTMRQLEILLAVHDKGSINEAAKALFLTQPTVSIQMRKLSDAIGEPLYQFINRKLIFTDVGLELVKTAVEV
LDSFARLDMALGYIRKFKSGTLRLAVVTTSKYFIPHLLGPFCEQFPDIDIQLNIGNREKTIERMKQGVDDFYVFSHPPQD
IDAQSLELLDNPLVAIAHQDHPLGKQASISLADLCEVPFLMREKGSGTRYAIEALFKQHKLQPNIKMTIESNEAIKHAVM
SKLGISIISAHTLTYGGQSGLVRLPVKELPIDSHWFFMWSTSKRPTLIASAFLKHIESNGRELLQDELDKSGLG
>Mature_314_residues
MQSRLHAHVGTMRQLEILLAVHDKGSINEAAKALFLTQPTVSIQMRKLSDAIGEPLYQFINRKLIFTDVGLELVKTAVEV
LDSFARLDMALGYIRKFKSGTLRLAVVTTSKYFIPHLLGPFCEQFPDIDIQLNIGNREKTIERMKQGVDDFYVFSHPPQD
IDAQSLELLDNPLVAIAHQDHPLGKQASISLADLCEVPFLMREKGSGTRYAIEALFKQHKLQPNIKMTIESNEAIKHAVM
SKLGISIISAHTLTYGGQSGLVRLPVKELPIDSHWFFMWSTSKRPTLIASAFLKHIESNGRELLQDELDKSGLG

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=26.7796610169492, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI157672245, Length=221, Percent_Identity=28.0542986425339, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787530, Length=310, Percent_Identity=23.8709677419355, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790399, Length=258, Percent_Identity=25.1937984496124, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789204, Length=259, Percent_Identity=27.027027027027, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=23.2081911262799, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788748, Length=253, Percent_Identity=25.6916996047431, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI145693105, Length=258, Percent_Identity=21.7054263565891, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=26.7489711934156, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788296, Length=266, Percent_Identity=23.6842105263158, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35200; Mature: 35200

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSRLHAHVGTMRQLEILLAVHDKGSINEAAKALFLTQPTVSIQMRKLSDAIGEPLYQFI
CCCCHHHHHHHHHHEEEEEEECCCCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHH
NRKLIFTDVGLELVKTAVEVLDSFARLDMALGYIRKFKSGTLRLAVVTTSKYFIPHLLGP
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH
FCEQFPDIDIQLNIGNREKTIERMKQGVDDFYVFSHPPQDIDAQSLELLDNPLVAIAHQD
HHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECC
HPLGKQASISLADLCEVPFLMREKGSGTRYAIEALFKQHKLQPNIKMTIESNEAIKHAVM
CCCCCCCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
SKLGISIISAHTLTYGGQSGLVRLPVKELPIDSHWFFMWSTSKRPTLIASAFLKHIESNG
HHHHHHHHHHHHEEECCCCCEEECCHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
RELLQDELDKSGLG
HHHHHHHHHHCCCC
>Mature Secondary Structure
MQSRLHAHVGTMRQLEILLAVHDKGSINEAAKALFLTQPTVSIQMRKLSDAIGEPLYQFI
CCCCHHHHHHHHHHEEEEEEECCCCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHH
NRKLIFTDVGLELVKTAVEVLDSFARLDMALGYIRKFKSGTLRLAVVTTSKYFIPHLLGP
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH
FCEQFPDIDIQLNIGNREKTIERMKQGVDDFYVFSHPPQDIDAQSLELLDNPLVAIAHQD
HHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEECC
HPLGKQASISLADLCEVPFLMREKGSGTRYAIEALFKQHKLQPNIKMTIESNEAIKHAVM
CCCCCCCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
SKLGISIISAHTLTYGGQSGLVRLPVKELPIDSHWFFMWSTSKRPTLIASAFLKHIESNG
HHHHHHHHHHHHEEECCCCCEEECCHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
RELLQDELDKSGLG
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA