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The map label for this gene is yciR [C]

Identifier: 119945725

GI number: 119945725

Start: 2497955

End: 2500066

Strand: Reverse

Name: yciR [C]

Synonym: Ping_2051

Alternate gene names: 119945725

Gene position: 2500066-2497955 (Counterclockwise)

Preceding gene: 119945726

Following gene: 119945721

Centisome position: 54.83

GC content: 38.16

Gene sequence:

>2112_bases
ATGGATAATGCGCTCCAATTAGAGCTGAATGCCGAAAGAGAAAAAAACAAGTTATTGTTAAATATTGTGAACAGTATTCC
AGAGCCCATTATGGCCAAAAATTGGGAGGGCAACTTTATTTTCGCAAATAAAGGTATCGCTGAACTTTATAGCACCTCTC
CAGAGGAGATGATTGGAAAAGAAGACTCCTTTTTTACAGGCAATAAAGAACAAGGTCAGTTTTTTAAAGAAAACGCCCAG
TCTATTATGCGACGCTTTGAGACTGAAATGGTCTACGAAGATTCTACTAATGCAAGGACAGCGGAGATTCGCCATTACCA
CTCCTTAAAAATCCCTTTTAAAAACAACAATGATGAACTAAATATTGTCATGTTTGCAAAAGATATTACTGAAATCACCG
CGCTTAAAAATACAGCAGAAGCCAATGCCAAGCGTTTGGGACATGTATTAGAGGTCTCCGGTGAGGGGATGTGGGATTGG
AATATACAAACCAATGAGGTGTTTCAGAATCAAAAATGGGCAGACATCACCGGCGTTAAACATTCAAAGAGATCGTTTTC
AGAGTTTCAGGATTGTCTTGTTGAAGAAGATAAAAAATATGTCCTTACCTCTCTTCAGGCGCTAATCGAAAAAAAAATTC
CTTATGATATTGAGTACAGATTTAGGCGCCCTGACGGTAAAGTGATATGGATTTGGGATAGAGGGCAGGTTCTTGAGTAT
GATGATCAGGGCAAGCCGAAGTTATTGGTTGGGATCATGCAGGATATTACAGAGAAAAAATTCAACCAGTCTGAAATCGA
GTTAATGGCCTTTTATGATACTTTAACCATGCTTCCCAACCGTGCACTATTGAATGATAGGTTAAACCTTGCGATTGAGC
ATAGCAAACGTTTTGAAAAATATGGTGCAGTGCTGTTTCTCGATTTAGATAACTTTAAAATCTTAAATGACTCTTATGGA
CACCAAGCGGGTGATGATTTATTAGTGATCGTAGCACAACGTATTCAATCGGTTATACGTAAGGATGATACTGTTGCTCG
ATTTGGCGGCGATGAATTTGTGATTGTGCTTAATGAACTGGATTCTGAGCCGGTCAAAGCGGCCATTAAGGCGCAACGTC
TTGCTCAGAGCATTTGTCATTCAATCAAGCAAAAAATTAATATAAAAATAAGCAATATGGCTGCCGATATTGATTACTTC
ATTACCGCAAGTGTTGGTATTACTATTTTCTATGGCCAGAGCAAAGTGCCCTCTGAACTACTTCAGCTTGCGGATCTGGC
ATTGTATCAGGCTAAGAAAAATGGCCGTGATGATTCTGCTATGTTTGACCCTGTGATGCAGGAAAAATTAGATTACAGCA
CTTGCTTAGATAAAGAGTTACGTCAGTCTTTGAAACAAAAAGATTTTGTGCTGTATTACCAACCCCAATACGATGCGAAG
CAAAACCTAGTGTCTGCCGAGGCTTTAATTCGCTGGAATCATCCAGAATTAGGGCTGGTCAACCCGGGTGATTTTATCAA
AGTGGCCGAAGAGTCCAACTTGATATTACCGATTGGTGATTGGGTATTAAGCGAAGCATGTCAGCAATTAAAAAAATGGC
AATCTGATCCACAATACCAGCACTTGTCCTTATCCGTTAATATCAGCGCTAAACAGATTTGGCAGAAAGATTTTGTGGCG
GGTATAAAAAGGATTGTTTCTGATTCTGATATTAACGTGTCTAAATTAAAATTAGAAATTACAGAATCTATTTTATTAAG
AGACATAAATGGAACGGCAGAAAAACTTAATGATCTGGTCGCGTTTGGATTAACCTTTTCTTTAGATGATTTTGGAACAG
GATATTCATCGTTGGGCTATTTAAAAAACTTACCCATTGATGAACTTAAAATTGACCAATCCTTTATTCGTGACCTATTT
GATAATAAAATGGATTTAATTATGGTCAAATCGATCATCGATTTGGGTAAAAACTTTGGTATTAATGTTGTTGCTGAAGG
GGTCGAGACTGAGGCTCATTTTGAAATTCTTAAGGAGTTTGGTTGCAAAATTTATCAAGGGTATTATTTCAGCCGTCCTG
TTCCTGTTTCAGAGTTTGTCACTCTGATTTGA

Upstream 100 bases:

>100_bases
ACAATAGACATTTATTGTGAACAGCTCAAACTTAACTGTCGTTGGCAGTTCAAGTTAGAAACATTATTTTATATTTATTC
ACAATATATTTGAGGTTTAC

Downstream 100 bases:

>100_bases
AATTTAAGTACTTTTTCCTTTATTGAATTTCAGTTTGAAAATGAACCAAGTTATCAAATAAATATTAATGTAAACAACAA
TCATCTGCAGCATAGCTAAC

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 703; Mature: 703

Protein sequence:

>703_residues
MDNALQLELNAEREKNKLLLNIVNSIPEPIMAKNWEGNFIFANKGIAELYSTSPEEMIGKEDSFFTGNKEQGQFFKENAQ
SIMRRFETEMVYEDSTNARTAEIRHYHSLKIPFKNNNDELNIVMFAKDITEITALKNTAEANAKRLGHVLEVSGEGMWDW
NIQTNEVFQNQKWADITGVKHSKRSFSEFQDCLVEEDKKYVLTSLQALIEKKIPYDIEYRFRRPDGKVIWIWDRGQVLEY
DDQGKPKLLVGIMQDITEKKFNQSEIELMAFYDTLTMLPNRALLNDRLNLAIEHSKRFEKYGAVLFLDLDNFKILNDSYG
HQAGDDLLVIVAQRIQSVIRKDDTVARFGGDEFVIVLNELDSEPVKAAIKAQRLAQSICHSIKQKINIKISNMAADIDYF
ITASVGITIFYGQSKVPSELLQLADLALYQAKKNGRDDSAMFDPVMQEKLDYSTCLDKELRQSLKQKDFVLYYQPQYDAK
QNLVSAEALIRWNHPELGLVNPGDFIKVAEESNLILPIGDWVLSEACQQLKKWQSDPQYQHLSLSVNISAKQIWQKDFVA
GIKRIVSDSDINVSKLKLEITESILLRDINGTAEKLNDLVAFGLTFSLDDFGTGYSSLGYLKNLPIDELKIDQSFIRDLF
DNKMDLIMVKSIIDLGKNFGINVVAEGVETEAHFEILKEFGCKIYQGYYFSRPVPVSEFVTLI

Sequences:

>Translated_703_residues
MDNALQLELNAEREKNKLLLNIVNSIPEPIMAKNWEGNFIFANKGIAELYSTSPEEMIGKEDSFFTGNKEQGQFFKENAQ
SIMRRFETEMVYEDSTNARTAEIRHYHSLKIPFKNNNDELNIVMFAKDITEITALKNTAEANAKRLGHVLEVSGEGMWDW
NIQTNEVFQNQKWADITGVKHSKRSFSEFQDCLVEEDKKYVLTSLQALIEKKIPYDIEYRFRRPDGKVIWIWDRGQVLEY
DDQGKPKLLVGIMQDITEKKFNQSEIELMAFYDTLTMLPNRALLNDRLNLAIEHSKRFEKYGAVLFLDLDNFKILNDSYG
HQAGDDLLVIVAQRIQSVIRKDDTVARFGGDEFVIVLNELDSEPVKAAIKAQRLAQSICHSIKQKINIKISNMAADIDYF
ITASVGITIFYGQSKVPSELLQLADLALYQAKKNGRDDSAMFDPVMQEKLDYSTCLDKELRQSLKQKDFVLYYQPQYDAK
QNLVSAEALIRWNHPELGLVNPGDFIKVAEESNLILPIGDWVLSEACQQLKKWQSDPQYQHLSLSVNISAKQIWQKDFVA
GIKRIVSDSDINVSKLKLEITESILLRDINGTAEKLNDLVAFGLTFSLDDFGTGYSSLGYLKNLPIDELKIDQSFIRDLF
DNKMDLIMVKSIIDLGKNFGINVVAEGVETEAHFEILKEFGCKIYQGYYFSRPVPVSEFVTLI
>Mature_703_residues
MDNALQLELNAEREKNKLLLNIVNSIPEPIMAKNWEGNFIFANKGIAELYSTSPEEMIGKEDSFFTGNKEQGQFFKENAQ
SIMRRFETEMVYEDSTNARTAEIRHYHSLKIPFKNNNDELNIVMFAKDITEITALKNTAEANAKRLGHVLEVSGEGMWDW
NIQTNEVFQNQKWADITGVKHSKRSFSEFQDCLVEEDKKYVLTSLQALIEKKIPYDIEYRFRRPDGKVIWIWDRGQVLEY
DDQGKPKLLVGIMQDITEKKFNQSEIELMAFYDTLTMLPNRALLNDRLNLAIEHSKRFEKYGAVLFLDLDNFKILNDSYG
HQAGDDLLVIVAQRIQSVIRKDDTVARFGGDEFVIVLNELDSEPVKAAIKAQRLAQSICHSIKQKINIKISNMAADIDYF
ITASVGITIFYGQSKVPSELLQLADLALYQAKKNGRDDSAMFDPVMQEKLDYSTCLDKELRQSLKQKDFVLYYQPQYDAK
QNLVSAEALIRWNHPELGLVNPGDFIKVAEESNLILPIGDWVLSEACQQLKKWQSDPQYQHLSLSVNISAKQIWQKDFVA
GIKRIVSDSDINVSKLKLEITESILLRDINGTAEKLNDLVAFGLTFSLDDFGTGYSSLGYLKNLPIDELKIDQSFIRDLF
DNKMDLIMVKSIIDLGKNFGINVVAEGVETEAHFEILKEFGCKIYQGYYFSRPVPVSEFVTLI

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=461, Percent_Identity=34.4902386117137, Blast_Score=278, Evalue=7e-76,
Organism=Escherichia coli, GI87081921, Length=444, Percent_Identity=32.2072072072072, Blast_Score=221, Evalue=8e-59,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=29.5774647887324, Blast_Score=179, Evalue=7e-46,
Organism=Escherichia coli, GI87081845, Length=256, Percent_Identity=33.203125, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=31.5573770491803, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=31.9066147859922, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=30.7692307692308, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=31.5789473684211, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI1788849, Length=442, Percent_Identity=25.5656108597285, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI87082096, Length=441, Percent_Identity=25.8503401360544, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=29.6296296296296, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=29.7520661157025, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1788381, Length=458, Percent_Identity=24.6724890829694, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=27.9569892473118, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87081881, Length=192, Percent_Identity=33.8541666666667, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=36.144578313253, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=176, Percent_Identity=34.6590909090909, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=179, Percent_Identity=29.0502793296089, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787262, Length=177, Percent_Identity=31.638418079096, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=34.9397590361446, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=175, Percent_Identity=30.8571428571429, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=187, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87081974, Length=115, Percent_Identity=38.2608695652174, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=30.5389221556886, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 80489; Mature: 80489

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNALQLELNAEREKNKLLLNIVNSIPEPIMAKNWEGNFIFANKGIAELYSTSPEEMIGK
CCCCEEEEECCCCCHHHHHHHHHHHCCCCHHCCCCCCCEEEECCCHHHHHCCCHHHHHCC
EDSFFTGNKEQGQFFKENAQSIMRRFETEMVYEDSTNARTAEIRHYHSLKIPFKNNNDEL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEHEEEEEEEEEECCCCCCCEE
NIVMFAKDITEITALKNTAEANAKRLGHVLEVSGEGMWDWNIQTNEVFQNQKWADITGVK
EEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCHHHHHCCCCCCCCCCCC
HSKRSFSEFQDCLVEEDKKYVLTSLQALIEKKIPYDIEYRFRRPDGKVIWIWDRGQVLEY
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCEEEE
DDQGKPKLLVGIMQDITEKKFNQSEIELMAFYDTLTMLPNRALLNDRLNLAIEHSKRFEK
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEHHHHHHHH
YGAVLFLDLDNFKILNDSYGHQAGDDLLVIVAQRIQSVIRKDDTVARFGGDEFVIVLNEL
CCCEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECC
DSEPVKAAIKAQRLAQSICHSIKQKINIKISNMAADIDYFITASVGITIFYGQSKVPSEL
CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEECCEEEEECCCCCHHHH
LQLADLALYQAKKNGRDDSAMFDPVMQEKLDYSTCLDKELRQSLKQKDFVLYYQPQYDAK
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
QNLVSAEALIRWNHPELGLVNPGDFIKVAEESNLILPIGDWVLSEACQQLKKWQSDPQYQ
HHHHHHHHEEEECCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCEE
HLSLSVNISAKQIWQKDFVAGIKRIVSDSDINVSKLKLEITESILLRDINGTAEKLNDLV
EEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCCCCCHHHHHHHHH
AFGLTFSLDDFGTGYSSLGYLKNLPIDELKIDQSFIRDLFDNKMDLIMVKSIIDLGKNFG
HHCEEEEECCCCCCHHHCCHHHCCCHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCC
INVVAEGVETEAHFEILKEFGCKIYQGYYFSRPVPVSEFVTLI
CEEEECCCCHHHHHHHHHHHCCEEEECEEECCCCCHHHHHHCC
>Mature Secondary Structure
MDNALQLELNAEREKNKLLLNIVNSIPEPIMAKNWEGNFIFANKGIAELYSTSPEEMIGK
CCCCEEEEECCCCCHHHHHHHHHHHCCCCHHCCCCCCCEEEECCCHHHHHCCCHHHHHCC
EDSFFTGNKEQGQFFKENAQSIMRRFETEMVYEDSTNARTAEIRHYHSLKIPFKNNNDEL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEEHEEEEEEEEEECCCCCCCEE
NIVMFAKDITEITALKNTAEANAKRLGHVLEVSGEGMWDWNIQTNEVFQNQKWADITGVK
EEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCHHHHHCCCCCCCCCCCC
HSKRSFSEFQDCLVEEDKKYVLTSLQALIEKKIPYDIEYRFRRPDGKVIWIWDRGQVLEY
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCEEEE
DDQGKPKLLVGIMQDITEKKFNQSEIELMAFYDTLTMLPNRALLNDRLNLAIEHSKRFEK
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEHHHHHHHH
YGAVLFLDLDNFKILNDSYGHQAGDDLLVIVAQRIQSVIRKDDTVARFGGDEFVIVLNEL
CCCEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECC
DSEPVKAAIKAQRLAQSICHSIKQKINIKISNMAADIDYFITASVGITIFYGQSKVPSEL
CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEECCEEEEECCCCCHHHH
LQLADLALYQAKKNGRDDSAMFDPVMQEKLDYSTCLDKELRQSLKQKDFVLYYQPQYDAK
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
QNLVSAEALIRWNHPELGLVNPGDFIKVAEESNLILPIGDWVLSEACQQLKKWQSDPQYQ
HHHHHHHHEEEECCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCEE
HLSLSVNISAKQIWQKDFVAGIKRIVSDSDINVSKLKLEITESILLRDINGTAEKLNDLV
EEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCCCCCHHHHHHHHH
AFGLTFSLDDFGTGYSSLGYLKNLPIDELKIDQSFIRDLFDNKMDLIMVKSIIDLGKNFG
HHCEEEEECCCCCCHHHCCHHHCCCHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCC
INVVAEGVETEAHFEILKEFGCKIYQGYYFSRPVPVSEFVTLI
CEEEECCCCHHHHHHHHHHHCCEEEECEEECCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]