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The map label for this gene is yedQ [H]

Identifier: 119945575

GI number: 119945575

Start: 2284517

End: 2285950

Strand: Direct

Name: yedQ [H]

Synonym: Ping_1880

Alternate gene names: 119945575

Gene position: 2284517-2285950 (Clockwise)

Preceding gene: 119945574

Following gene: 119945576

Centisome position: 50.1

GC content: 33.19

Gene sequence:

>1434_bases
ATGAAATCTAAATATCACATTGTTATCACAGTCACTTTTTTATTAGTGACACTTTCAGTCATTCTCTCCACCGTGAATTA
TTGGGTTTCTCTCAATTCAACAGAAGTGCAGCTCAGGGAACGTTCTTTACCATTAACCGTTGATAACATCTCGATGGAAA
TTCAAAAAAAAATTATCGGACCTCATATTATCTCGTCCATGATGGCCAATGACACTTTCCTGCAAGACTGGTTAATTAAT
AATGAAGGTGATGTTGATAAAATTTCAAAATATCTTGAAATGATTAAAAATAAAAACAAGTTGCTGGTCACCTTTCTTGT
CTCCGGAAAAACTAAAAATTATTATACTGCCGAGGGTTTGTTAGAGCAGGTTGTTGAAGATAATCCAAATAATGCTTGGT
ATTTTAGCTTTATGGAAAAGCCTGACAAGAATGAAATTAACTTCGATTTCAATGACAATATTGATAATGAGATGATTATA
TTTATCAATCATAAAATTTATGATCAACAGTCTCATCTAATAGGCGCGACAGGTATTGGTTTAAAATTTTCTGATGTAAA
CGAGATGCTCAATAATTTTCGGCAAAAATATAATTTTAATGTTTATTTTTTAAATCAGGCGGGTAAAGTTATCCTTTACG
AAAAAGGTGTTAACCCTCTAAGGGATATTAAAAATATTTCTGAACTAAACGTCCTGAGAGATTCTATTATTAGTAAAGAA
TCTAAACTGCTTGAATATACCAAGGAAAGTGAAGAGTATTTAATGAGTACCAAGTATATTCCTGAGCTGGACCTCTATTT
AGTTGTGGAGGCAAAACGTTCAGAATTTTTATTGAATGTACAAAAAACATTCTATTTTAACTTGTTATGCTCACTACTTG
GGACGATCCTGATAGCTTTTTTAATTTTAAAAACCGTCAATAAATATTATAAAGAGATGGAACATCTTGCTAAATATGAT
GCCTTAACCAATTTAAAAAACCGCCGCGCATTTAATGAAGAGCTGGAGCATTCTTTATTACTTTGCAAACGGCGGGCCAG
TCATTTATCTCTGACCTTCTTTGATTTGGATGATTTTAAAAGTGTGAATGATACCTTTGGACATCAAACCGGAGACAAAG
TACTTCAATATGTTGCCGATATTTTAAAAGATGATATCCGTCAGACGGATATCATAGGACGATGGGGCGGAGAAGAGTTT
ATTGTCGCTTTTATTGATACTGAGTTAGAAGACGCAAAGTTTATTACTGAAAAAATCAGAGCACATATTGAAAAAGATAG
CTTTTTATCTCAATTAAAAAATATGAAAGTAACGGCCAGTTTTGGTCTTACAACTATCACCACTCAAGATACCCTGGACT
CACTATTAGAGAGGGCAGATCAAGCCCTTTATAAAGCCAAAGAGAATGGGAAAAACCAAGTTTTTTGCCTTTAA

Upstream 100 bases:

>100_bases
TATTTTTATTTACAGTCAAACGGTTAATTGCTGGGCTACAATCAATAAAGCAAAGAAATTTTGTCATTATATAATAGTGG
GTTATTAAACAGGTCAATTC

Downstream 100 bases:

>100_bases
TGAAAAAGTCTTTTATTCCTGGTTTGGTTCACTTCAAACGAGGGGCTACAATCATCAATCAGGTGTTTATTTTAAAATAA
ACACTTGATTTTTTATTTAT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MKSKYHIVITVTFLLVTLSVILSTVNYWVSLNSTEVQLRERSLPLTVDNISMEIQKKIIGPHIISSMMANDTFLQDWLIN
NEGDVDKISKYLEMIKNKNKLLVTFLVSGKTKNYYTAEGLLEQVVEDNPNNAWYFSFMEKPDKNEINFDFNDNIDNEMII
FINHKIYDQQSHLIGATGIGLKFSDVNEMLNNFRQKYNFNVYFLNQAGKVILYEKGVNPLRDIKNISELNVLRDSIISKE
SKLLEYTKESEEYLMSTKYIPELDLYLVVEAKRSEFLLNVQKTFYFNLLCSLLGTILIAFLILKTVNKYYKEMEHLAKYD
ALTNLKNRRAFNEELEHSLLLCKRRASHLSLTFFDLDDFKSVNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEF
IVAFIDTELEDAKFITEKIRAHIEKDSFLSQLKNMKVTASFGLTTITTQDTLDSLLERADQALYKAKENGKNQVFCL

Sequences:

>Translated_477_residues
MKSKYHIVITVTFLLVTLSVILSTVNYWVSLNSTEVQLRERSLPLTVDNISMEIQKKIIGPHIISSMMANDTFLQDWLIN
NEGDVDKISKYLEMIKNKNKLLVTFLVSGKTKNYYTAEGLLEQVVEDNPNNAWYFSFMEKPDKNEINFDFNDNIDNEMII
FINHKIYDQQSHLIGATGIGLKFSDVNEMLNNFRQKYNFNVYFLNQAGKVILYEKGVNPLRDIKNISELNVLRDSIISKE
SKLLEYTKESEEYLMSTKYIPELDLYLVVEAKRSEFLLNVQKTFYFNLLCSLLGTILIAFLILKTVNKYYKEMEHLAKYD
ALTNLKNRRAFNEELEHSLLLCKRRASHLSLTFFDLDDFKSVNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEF
IVAFIDTELEDAKFITEKIRAHIEKDSFLSQLKNMKVTASFGLTTITTQDTLDSLLERADQALYKAKENGKNQVFCL
>Mature_477_residues
MKSKYHIVITVTFLLVTLSVILSTVNYWVSLNSTEVQLRERSLPLTVDNISMEIQKKIIGPHIISSMMANDTFLQDWLIN
NEGDVDKISKYLEMIKNKNKLLVTFLVSGKTKNYYTAEGLLEQVVEDNPNNAWYFSFMEKPDKNEINFDFNDNIDNEMII
FINHKIYDQQSHLIGATGIGLKFSDVNEMLNNFRQKYNFNVYFLNQAGKVILYEKGVNPLRDIKNISELNVLRDSIISKE
SKLLEYTKESEEYLMSTKYIPELDLYLVVEAKRSEFLLNVQKTFYFNLLCSLLGTILIAFLILKTVNKYYKEMEHLAKYD
ALTNLKNRRAFNEELEHSLLLCKRRASHLSLTFFDLDDFKSVNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEF
IVAFIDTELEDAKFITEKIRAHIEKDSFLSQLKNMKVTASFGLTTITTQDTLDSLLERADQALYKAKENGKNQVFCL

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=201, Percent_Identity=34.3283582089552, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=37.9518072289157, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=32.2404371584699, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788381, Length=192, Percent_Identity=32.2916666666667, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787262, Length=201, Percent_Identity=31.8407960199005, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=32.2981366459627, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=195, Percent_Identity=29.7435897435897, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=35.5828220858896, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=32.9113924050633, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=34.3949044585987, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081974, Length=182, Percent_Identity=29.1208791208791, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787056, Length=176, Percent_Identity=34.0909090909091, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=29.2682926829268, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 55342; Mature: 55342

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKYHIVITVTFLLVTLSVILSTVNYWVSLNSTEVQLRERSLPLTVDNISMEIQKKIIG
CCCCEEEEEEHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEEECHHHHHHHHHCC
PHIISSMMANDTFLQDWLINNEGDVDKISKYLEMIKNKNKLLVTFLVSGKTKNYYTAEGL
HHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHH
LEQVVEDNPNNAWYFSFMEKPDKNEINFDFNDNIDNEMIIFINHKIYDQQSHLIGATGIG
HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECEEECCCCCEEEECCCC
LKFSDVNEMLNNFRQKYNFNVYFLNQAGKVILYEKGVNPLRDIKNISELNVLRDSIISKE
EEHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
SKLLEYTKESEEYLMSTKYIPELDLYLVVEAKRSEFLLNVQKTFYFNLLCSLLGTILIAF
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHEEHHHHHHHHHHHHHHHHHHHHHH
LILKTVNKYYKEMEHLAKYDALTNLKNRRAFNEELEHSLLLCKRRASHLSLTFFDLDDFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHC
SVNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEFIVAFIDTELEDAKFITEKIR
CHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCEECCCCCEEEEEEECCCCHHHHHHHHHHH
AHIEKDSFLSQLKNMKVTASFGLTTITTQDTLDSLLERADQALYKAKENGKNQVFCL
HHHHHHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MKSKYHIVITVTFLLVTLSVILSTVNYWVSLNSTEVQLRERSLPLTVDNISMEIQKKIIG
CCCCEEEEEEHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEEECHHHHHHHHHCC
PHIISSMMANDTFLQDWLINNEGDVDKISKYLEMIKNKNKLLVTFLVSGKTKNYYTAEGL
HHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHH
LEQVVEDNPNNAWYFSFMEKPDKNEINFDFNDNIDNEMIIFINHKIYDQQSHLIGATGIG
HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECEEECCCCCEEEECCCC
LKFSDVNEMLNNFRQKYNFNVYFLNQAGKVILYEKGVNPLRDIKNISELNVLRDSIISKE
EEHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
SKLLEYTKESEEYLMSTKYIPELDLYLVVEAKRSEFLLNVQKTFYFNLLCSLLGTILIAF
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHEEHHHHHHHHHHHHHHHHHHHHHH
LILKTVNKYYKEMEHLAKYDALTNLKNRRAFNEELEHSLLLCKRRASHLSLTFFDLDDFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHC
SVNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEFIVAFIDTELEDAKFITEKIR
CHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCEECCCCCEEEEEEECCCCHHHHHHHHHHH
AHIEKDSFLSQLKNMKVTASFGLTTITTQDTLDSLLERADQALYKAKENGKNQVFCL
HHHHHHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]