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The map label for this gene is sufD [C]

Identifier: 119945238

GI number: 119945238

Start: 1852323

End: 1853750

Strand: Reverse

Name: sufD [C]

Synonym: Ping_1506

Alternate gene names: 119945238

Gene position: 1853750-1852323 (Counterclockwise)

Preceding gene: 119945239

Following gene: 119945237

Centisome position: 40.66

GC content: 46.5

Gene sequence:

>1428_bases
ATGAATGCCCGTGAACGTTTGCTTAAAGACTTTACTCGAAGCAAGAAATATTTGCCCGGACATTTATTGCCCTGGTTAAA
CGATCTGCGGGAAAGTGCCATCAAAAATTTTGCAGCTCAAGGTTTCCCAAGCCCCAAAGATGAAAGTTGGAAATACACTA
ATACAAAAAAGCTGCAGCAAACTGAATATTGTCTTGCCCAACAGTCAATCATTCCTCCTACTGACTCTCTAACCGCTCAA
ATTAGTGAGCAACAGTTTTGCCCTGATGAGCATCGCATGGTATTTATTAATGGGACTTATCACCATGATCTTTCATCGAA
TCCCCCCTTGCCTAAGGGCATTATTCTTAGCAGTTTCGCTCAGGCTCTGCAGGATCACCCTATCCTAATAGCATCAACAT
TAGGGGAAATGGTTAATCACCAAACACACCCTTTCAGCGCATTAAATAGCGCATTTATGTCCGACGGCCTGTTTTTATGG
GCTGCGGAAAATAGTCAAATGGCCCCGCCCATTCACTGCCTGTTTATTTCCACCACCACCGCCAAGACCGTTGTTTGTTA
CCCTCGGCTACTTTTGGTACTTAAAAACAAAACGCAATTAACACTGATCGAGCACTATATTGATCTCTGCTCCCCCAGAT
CAGATCCAGACATGACGGCAGCCAATGGGACTAGCGGTAATCCTAATTTAATCAATGCGGTGACAGAGATACACCTTGGT
TCTGAAGCGCAGTTGGATCACTATAAATTACAGCGCGAGTCGCTTAACAGCAGCCATATTGCTGCCATGTATGTGCAGCA
GCACCAGGCAAGCCGGTTCACTTCGCACAGTTATTCCTTGGGTGCGCCGCTTGCGCGATACGACATTCAAGTTGAGCTTA
CCGGCAGCCAATGCGAATGTTGTTTGAACGGGGTATATTTGGCAGATGATAACCAGCACGTTGATTACCATACTCAAATA
ACGCACTTAGCACCGGGCTGCAGCAGTCAGCAACTCTACAAAGGGGTAATCCAAGGACACGCGCGGGCAGTTTTTAACGG
TAAAGTGATCATACATCCCGAGGCGCAACAATCCAATGCGAAGCAGCTCAATAACAACCTATTACTCAGTGATAACGGCG
AAGTTGATACTAAACCCGAGCTGCAGATCTATGCTGATGATGTTATATGTAACCATGGTGCCACCGTTGGACAGTTGGAT
ACGCAGGCGCTATTTTATCTGCAGTCCCGGGGGATCAGTGAAAAGGATGCGCAAGCCTGTCTGGTTGATGGCTTTGTCGG
TGAACTGCTTGAGCGTATCAATCATCTCTCCCTGCGCAACTTTATTCAGCTGTCCATCAGTGCACAACTTAAGCAGTTGG
TGGGTAATGATGCCGGCAACTTAGCGCTGTTTCCCCCAATGGAAAATGGTGAGATGTTATGTCCTTAG

Upstream 100 bases:

>100_bases
ATTGCCTAAGGCACCTTCCACAGAAAAAAATGCTTCTAAACAGCCTTAATATTATCTAACAAAGGCTTAAATTAAATATT
GAGCCACTCAGGAGGTACAG

Downstream 100 bases:

>100_bases
TCGACCGACCAGCAGAGCATGGCAGTTTGCCATTAAACAAGGTTGATTGGCCGGCAATTCGGCGTGATTTTCCTCTGTTA
GCACAAAAACCGTATAATAA

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MNARERLLKDFTRSKKYLPGHLLPWLNDLRESAIKNFAAQGFPSPKDESWKYTNTKKLQQTEYCLAQQSIIPPTDSLTAQ
ISEQQFCPDEHRMVFINGTYHHDLSSNPPLPKGIILSSFAQALQDHPILIASTLGEMVNHQTHPFSALNSAFMSDGLFLW
AAENSQMAPPIHCLFISTTTAKTVVCYPRLLLVLKNKTQLTLIEHYIDLCSPRSDPDMTAANGTSGNPNLINAVTEIHLG
SEAQLDHYKLQRESLNSSHIAAMYVQQHQASRFTSHSYSLGAPLARYDIQVELTGSQCECCLNGVYLADDNQHVDYHTQI
THLAPGCSSQQLYKGVIQGHARAVFNGKVIIHPEAQQSNAKQLNNNLLLSDNGEVDTKPELQIYADDVICNHGATVGQLD
TQALFYLQSRGISEKDAQACLVDGFVGELLERINHLSLRNFIQLSISAQLKQLVGNDAGNLALFPPMENGEMLCP

Sequences:

>Translated_475_residues
MNARERLLKDFTRSKKYLPGHLLPWLNDLRESAIKNFAAQGFPSPKDESWKYTNTKKLQQTEYCLAQQSIIPPTDSLTAQ
ISEQQFCPDEHRMVFINGTYHHDLSSNPPLPKGIILSSFAQALQDHPILIASTLGEMVNHQTHPFSALNSAFMSDGLFLW
AAENSQMAPPIHCLFISTTTAKTVVCYPRLLLVLKNKTQLTLIEHYIDLCSPRSDPDMTAANGTSGNPNLINAVTEIHLG
SEAQLDHYKLQRESLNSSHIAAMYVQQHQASRFTSHSYSLGAPLARYDIQVELTGSQCECCLNGVYLADDNQHVDYHTQI
THLAPGCSSQQLYKGVIQGHARAVFNGKVIIHPEAQQSNAKQLNNNLLLSDNGEVDTKPELQIYADDVICNHGATVGQLD
TQALFYLQSRGISEKDAQACLVDGFVGELLERINHLSLRNFIQLSISAQLKQLVGNDAGNLALFPPMENGEMLCP
>Mature_475_residues
MNARERLLKDFTRSKKYLPGHLLPWLNDLRESAIKNFAAQGFPSPKDESWKYTNTKKLQQTEYCLAQQSIIPPTDSLTAQ
ISEQQFCPDEHRMVFINGTYHHDLSSNPPLPKGIILSSFAQALQDHPILIASTLGEMVNHQTHPFSALNSAFMSDGLFLW
AAENSQMAPPIHCLFISTTTAKTVVCYPRLLLVLKNKTQLTLIEHYIDLCSPRSDPDMTAANGTSGNPNLINAVTEIHLG
SEAQLDHYKLQRESLNSSHIAAMYVQQHQASRFTSHSYSLGAPLARYDIQVELTGSQCECCLNGVYLADDNQHVDYHTQI
THLAPGCSSQQLYKGVIQGHARAVFNGKVIIHPEAQQSNAKQLNNNLLLSDNGEVDTKPELQIYADDVICNHGATVGQLD
TQALFYLQSRGISEKDAQACLVDGFVGELLERINHLSLRNFIQLSISAQLKQLVGNDAGNLALFPPMENGEMLCP

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=417, Percent_Identity=28.7769784172662, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI87081955, Length=350, Percent_Identity=24.5714285714286, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 52718; Mature: 52718

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARERLLKDFTRSKKYLPGHLLPWLNDLRESAIKNFAAQGFPSPKDESWKYTNTKKLQQ
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
TEYCLAQQSIIPPTDSLTAQISEQQFCPDEHRMVFINGTYHHDLSSNPPLPKGIILSSFA
HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECEEECCCCCCCCCCHHHHHHHHH
QALQDHPILIASTLGEMVNHQTHPFSALNSAFMSDGLFLWAAENSQMAPPIHCLFISTTT
HHHHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCC
AKTVVCYPRLLLVLKNKTQLTLIEHYIDLCSPRSDPDMTAANGTSGNPNLINAVTEIHLG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHEECC
SEAQLDHYKLQRESLNSSHIAAMYVQQHQASRFTSHSYSLGAPLARYDIQVELTGSQCEC
CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCHHHH
CLNGVYLADDNQHVDYHTQITHLAPGCSSQQLYKGVIQGHARAVFNGKVIIHPEAQQSNA
HHCCEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEECCEEEECCCCCCCHH
KQLNNNLLLSDNGEVDTKPELQIYADDVICNHGATVGQLDTQALFYLQSRGISEKDAQAC
HHHCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
LVDGFVGELLERINHLSLRNFIQLSISAQLKQLVGNDAGNLALFPPMENGEMLCP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MNARERLLKDFTRSKKYLPGHLLPWLNDLRESAIKNFAAQGFPSPKDESWKYTNTKKLQQ
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
TEYCLAQQSIIPPTDSLTAQISEQQFCPDEHRMVFINGTYHHDLSSNPPLPKGIILSSFA
HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECEEECCCCCCCCCCHHHHHHHHH
QALQDHPILIASTLGEMVNHQTHPFSALNSAFMSDGLFLWAAENSQMAPPIHCLFISTTT
HHHHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCC
AKTVVCYPRLLLVLKNKTQLTLIEHYIDLCSPRSDPDMTAANGTSGNPNLINAVTEIHLG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHEECC
SEAQLDHYKLQRESLNSSHIAAMYVQQHQASRFTSHSYSLGAPLARYDIQVELTGSQCEC
CCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCHHHH
CLNGVYLADDNQHVDYHTQITHLAPGCSSQQLYKGVIQGHARAVFNGKVIIHPEAQQSNA
HHCCEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEECCEEEECCCCCCCHH
KQLNNNLLLSDNGEVDTKPELQIYADDVICNHGATVGQLDTQALFYLQSRGISEKDAQAC
HHHCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
LVDGFVGELLERINHLSLRNFIQLSISAQLKQLVGNDAGNLALFPPMENGEMLCP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]