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The map label for this gene is hoxY [H]

Identifier: 119944967

GI number: 119944967

Start: 1518277

End: 1519578

Strand: Reverse

Name: hoxY [H]

Synonym: Ping_1216

Alternate gene names: 119944967

Gene position: 1519578-1518277 (Counterclockwise)

Preceding gene: 119944968

Following gene: 119944966

Centisome position: 33.33

GC content: 44.32

Gene sequence:

>1302_bases
ATGGTTATGAGCAATCACAGCAACACCTTCAGCATAGATGGCCGGGAGATCCCTTTTATAGCGGGAGAGACCGTTATGCA
GGCCGCGCTTAAAGCCAATATTTATATTCCACATTTATGTTTTAATCCGGAATTCCCCCCTAATGGCAGTTGTAAACTCT
GTACCTGCGACATTAACGGCCGTAAAAAATCATCCTGCTGCACAGAGGCAAAGCAGGATATGCAGGTCAACAATGAAACC
CATGAGCTCACTGTCATGAGGCGTACTCTAGTACAAATGCTGTTTGTCGAAGGTAATCACTACTGCCCTTTTTGCGAACG
CAGTGGTAACTGTCAATTACAGGCCATCGCCTATGATTTAGGGGTGACCGATTTGCATTTTCCGCAGTTTAACGCGCAAA
GAAATGTCGATGCCAGTCACCCGGATCTGATGCTCGATCTGAACCGCTGTATATTTTGTGAGCTGTGCATTCGATCCAGT
ACAGAAGTTGATCACAAAGATATCTTTACCATTGCCGGGCGCAGCATTAATAAAAGACTGGCCATTAATTCAAAAAGTGG
ACTTTTAAAAGACACTGCAATGAAGGTCACCGATAAATCAGCTCATATCTGTCCGGTCGGCTGCATTATCATTAAAGGGG
AAGGTTTTAAAACCCCGATTGGTCAGCGACTTTATGACCAGCACTCAATTCGGGATCTGGGCAATCTTCGCCCAGAAAGT
GCGATCAAAGCAAAAAGTATAGTGCAGCCAGACGTTAAGCCTAAGAAAAAACTAAAACTGGCGACCTGCTCTTTAGCCGG
ATGTTTTGGCTGTCATATGTCCTTTCTTGATATGGATGAACGCCTTATCGAGCTGCTTGAGCGGGTTGAACTAAGCCGCT
CCCCCTTGAACGATATAAAAACCTGCGCGCCGGATTGTGATCTGGGGTTAATTGAAGGGGCCGTCTGTAATACAGAAAAT
ATTGCGGTACTGAGACATTTTCGAGAAAGCTGTAAAATTATTATTGCCGTGGGGTCTTGTGCGATTAACGGTGGCGTCCC
TTCACTGCGTAATAATATTGATGTTAAGGACTGTTTAGATGAAGCTTATCTTAATGGCATTGGTCTGGTGAACCCGAAAG
TCCCTATTGATAAAGAGCTCCCCTATCTGCTTGAAAAAGTTTACCCCATTCATGAAGTCATTAAAGTTGATTATTTTCTA
CCCGGTTGCCCGCCTCCTGCTGATGCTTTTTGGAAAATACTCAATGATTTGCTGGACGGGAAAGAGCCAGAATTACCCTA
TGACCTATTACACTTTGATTGA

Upstream 100 bases:

>100_bases
GCATGACAGATATTGAGTATCAGCCTTCCTTTGATGTGGAAAAATCAATTCAGCGGGCGATTGATATCGTCACCATAGAG
AGTAATTCATAGGGTTATTA

Downstream 100 bases:

>100_bases
TGGACAATGATTAATGGACAACCCTATGGATCATTCATTAGACACAGCAGAAAACAGCGAAAACCTGAAAAGATTTGTGA
TTGAACCTGTATCAAGAGTA

Product: hydrogen dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MVMSNHSNTFSIDGREIPFIAGETVMQAALKANIYIPHLCFNPEFPPNGSCKLCTCDINGRKKSSCCTEAKQDMQVNNET
HELTVMRRTLVQMLFVEGNHYCPFCERSGNCQLQAIAYDLGVTDLHFPQFNAQRNVDASHPDLMLDLNRCIFCELCIRSS
TEVDHKDIFTIAGRSINKRLAINSKSGLLKDTAMKVTDKSAHICPVGCIIIKGEGFKTPIGQRLYDQHSIRDLGNLRPES
AIKAKSIVQPDVKPKKKLKLATCSLAGCFGCHMSFLDMDERLIELLERVELSRSPLNDIKTCAPDCDLGLIEGAVCNTEN
IAVLRHFRESCKIIIAVGSCAINGGVPSLRNNIDVKDCLDEAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFL
PGCPPPADAFWKILNDLLDGKEPELPYDLLHFD

Sequences:

>Translated_433_residues
MVMSNHSNTFSIDGREIPFIAGETVMQAALKANIYIPHLCFNPEFPPNGSCKLCTCDINGRKKSSCCTEAKQDMQVNNET
HELTVMRRTLVQMLFVEGNHYCPFCERSGNCQLQAIAYDLGVTDLHFPQFNAQRNVDASHPDLMLDLNRCIFCELCIRSS
TEVDHKDIFTIAGRSINKRLAINSKSGLLKDTAMKVTDKSAHICPVGCIIIKGEGFKTPIGQRLYDQHSIRDLGNLRPES
AIKAKSIVQPDVKPKKKLKLATCSLAGCFGCHMSFLDMDERLIELLERVELSRSPLNDIKTCAPDCDLGLIEGAVCNTEN
IAVLRHFRESCKIIIAVGSCAINGGVPSLRNNIDVKDCLDEAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFL
PGCPPPADAFWKILNDLLDGKEPELPYDLLHFD
>Mature_433_residues
MVMSNHSNTFSIDGREIPFIAGETVMQAALKANIYIPHLCFNPEFPPNGSCKLCTCDINGRKKSSCCTEAKQDMQVNNET
HELTVMRRTLVQMLFVEGNHYCPFCERSGNCQLQAIAYDLGVTDLHFPQFNAQRNVDASHPDLMLDLNRCIFCELCIRSS
TEVDHKDIFTIAGRSINKRLAINSKSGLLKDTAMKVTDKSAHICPVGCIIIKGEGFKTPIGQRLYDQHSIRDLGNLRPES
AIKAKSIVQPDVKPKKKLKLATCSLAGCFGCHMSFLDMDERLIELLERVELSRSPLNDIKTCAPDCDLGLIEGAVCNTEN
IAVLRHFRESCKIIIAVGSCAINGGVPSLRNNIDVKDCLDEAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFL
PGCPPPADAFWKILNDLLDGKEPELPYDLLHFD

Specific function: Ndh-1 Shuttles Electrons From NADH, Via Fmn And Iron- Sulfur (Fe-S) Centers, To Quinones In The Respiratory Chain. The Immediate Electron Acceptor For The Enzyme In This Species Is Believed To Be Ubiquinone. Couples The Redox Reaction To Proton Translocat

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI33519475, Length=209, Percent_Identity=23.9234449760766, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI145693161, Length=162, Percent_Identity=30.2469135802469, Blast_Score=79, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI193209088, Length=212, Percent_Identity=25, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17565758, Length=212, Percent_Identity=25, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI32566231, Length=212, Percent_Identity=25, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640559, Length=212, Percent_Identity=23.5849056603774, Blast_Score=79, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24640557, Length=212, Percent_Identity=23.5849056603774, Blast_Score=79, Evalue=9e-15,

Paralogues:

None

Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.1.2 [H]

Molecular weight: Translated: 48240; Mature: 48240

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00642 COMPLEX1_75K_2 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
5.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMSNHSNTFSIDGREIPFIAGETVMQAALKANIYIPHLCFNPEFPPNGSCKLCTCDING
CEECCCCCEEEECCCCCCEECCHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEEECCC
RKKSSCCTEAKQDMQVNNETHELTVMRRTLVQMLFVEGNHYCPFCERSGNCQLQAIAYDL
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEC
GVTDLHFPQFNAQRNVDASHPDLMLDLNRCIFCELCIRSSTEVDHKDIFTIAGRSINKRL
CCCEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCHHEEEECCCCCCCEE
AINSKSGLLKDTAMKVTDKSAHICPVGCIIIKGEGFKTPIGQRLYDQHSIRDLGNLRPES
EECCCCCCHHHHHHEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHH
AIKAKSIVQPDVKPKKKLKLATCSLAGCFGCHMSFLDMDERLIELLERVELSRSPLNDIK
HHHHHHHCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
TCAPDCDLGLIEGAVCNTENIAVLRHFRESCKIIIAVGSCAINGGVPSLRNNIDVKDCLD
HCCCCCCCHHHCCCEECCCCHHHHHHHHHCCEEEEEEECEEECCCCCHHHCCCCHHHHHH
EAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAFWKILNDLLDG
HHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHEEHEECCCCCCCHHHHHHHHHHHHCC
KEPELPYDLLHFD
CCCCCCCHHCCCC
>Mature Secondary Structure
MVMSNHSNTFSIDGREIPFIAGETVMQAALKANIYIPHLCFNPEFPPNGSCKLCTCDING
CEECCCCCEEEECCCCCCEECCHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEEECCC
RKKSSCCTEAKQDMQVNNETHELTVMRRTLVQMLFVEGNHYCPFCERSGNCQLQAIAYDL
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEC
GVTDLHFPQFNAQRNVDASHPDLMLDLNRCIFCELCIRSSTEVDHKDIFTIAGRSINKRL
CCCEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCHHEEEECCCCCCCEE
AINSKSGLLKDTAMKVTDKSAHICPVGCIIIKGEGFKTPIGQRLYDQHSIRDLGNLRPES
EECCCCCCHHHHHHEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHH
AIKAKSIVQPDVKPKKKLKLATCSLAGCFGCHMSFLDMDERLIELLERVELSRSPLNDIK
HHHHHHHCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
TCAPDCDLGLIEGAVCNTENIAVLRHFRESCKIIIAVGSCAINGGVPSLRNNIDVKDCLD
HCCCCCCCHHHCCCEECCCCHHHHHHHHHCCEEEEEEECEEECCCCCHHHCCCCHHHHHH
EAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAFWKILNDLLDG
HHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHEEHEECCCCCCCHHHHHHHHHHHHCC
KEPELPYDLLHFD
CCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2188945; 12948488; 2496982 [H]