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The map label for this gene is nirD [H]

Identifier: 119944781

GI number: 119944781

Start: 1288810

End: 1289142

Strand: Reverse

Name: nirD [H]

Synonym: Ping_1023

Alternate gene names: 119944781

Gene position: 1289142-1288810 (Counterclockwise)

Preceding gene: 119944782

Following gene: 119944780

Centisome position: 28.27

GC content: 40.84

Gene sequence:

>333_bases
ATGAGCCAGTGGTTTAATATTTGTAAGTATGAAGATCTTGCTCCTAACAGCGGCATTTGTGCCCAGTTTGAAAGTCAGCA
AGTCGCGATTTTTTTCTGTCAACGTAACCAGGATTTATATGCAGTTTCAAACTTTGATCCAATATCACAGGCGAATGTTA
TTTCGCGCGGAATAATAGGGTCAACGCAGGGAGAAACCTATGTTGCATCACCTTTGTATAAACAGCGTTTTAATTTAAAA
ACCGGCGTCTGCTTAGATTTACCTGAGCATATCTTAAAAACCTATGCAGTGCGCATTGAAGCCGATCACGTACAACTGCA
AGCGACAGCTTAA

Upstream 100 bases:

>100_bases
GACACCGATAATCAGTTGGCATTTGAACTCGAGCGCGAGCAGCGTATACCCGCCCAGCAAACAATCAAAGTCCTAGAATT
AACGGCATAAGGAAAAACTC

Downstream 100 bases:

>100_bases
TTATTAAGTTGAAGCTATTAAAGGAGCCCTATCTGCTAAGCAAATAGGGCACAAAAAATTAAAGGAAAGAATCATGGATA
GAACTTCATTTAATATATTA

Product: nitrite reductase (NAD(P)H), small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSQWFNICKYEDLAPNSGICAQFESQQVAIFFCQRNQDLYAVSNFDPISQANVISRGIIGSTQGETYVASPLYKQRFNLK
TGVCLDLPEHILKTYAVRIEADHVQLQATA

Sequences:

>Translated_110_residues
MSQWFNICKYEDLAPNSGICAQFESQQVAIFFCQRNQDLYAVSNFDPISQANVISRGIIGSTQGETYVASPLYKQRFNLK
TGVCLDLPEHILKTYAVRIEADHVQLQATA
>Mature_109_residues
SQWFNICKYEDLAPNSGICAQFESQQVAIFFCQRNQDLYAVSNFDPISQANVISRGIIGSTQGETYVASPLYKQRFNLKT
GVCLDLPEHILKTYAVRIEADHVQLQATA

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=108, Percent_Identity=44.4444444444444, Blast_Score=106, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 12378; Mature: 12247

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQWFNICKYEDLAPNSGICAQFESQQVAIFFCQRNQDLYAVSNFDPISQANVISRGIIG
CCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCEEEECCCCCCCCCHHHHCCCCC
STQGETYVASPLYKQRFNLKTGVCLDLPEHILKTYAVRIEADHVQLQATA
CCCCCEEEECCHHHHHCCCCCCEEECCHHHHHHHHEEEEECCEEEEEEEC
>Mature Secondary Structure 
SQWFNICKYEDLAPNSGICAQFESQQVAIFFCQRNQDLYAVSNFDPISQANVISRGIIG
CCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCEEEECCCCCCCCCHHHHCCCCC
STQGETYVASPLYKQRFNLKTGVCLDLPEHILKTYAVRIEADHVQLQATA
CCCCCEEEECCHHHHHCCCCCCEEECCHHHHHHHHEEEEECCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]