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The map label for this gene is ybeY [C]

Identifier: 119944306

GI number: 119944306

Start: 681616

End: 682092

Strand: Reverse

Name: ybeY [C]

Synonym: Ping_0533

Alternate gene names: 119944306

Gene position: 682092-681616 (Counterclockwise)

Preceding gene: 119944307

Following gene: 119944305

Centisome position: 14.96

GC content: 41.09

Gene sequence:

>477_bases
ATGCAATTATATGTCGATTTACAAATTGCCTGCTCTGATCCTAATGACCTCCCAATGCCGGCATCCTTTGAGAAATGGAT
TGAAGCGGCTATATTAGGTGGTTCAGAAAGTCATCGGGAAGAAGCGGAATTAACGGTCCGTATTGTTGATCAAGATGAAA
TTATGCAGCTAAACCACCAATATCGAAATATAAGCAAAACCACTAATGTACTCGCTTTTCCTTTTCAAAATCCCCCTGGG
CTTACCTTGCCATTACTCGGTGATCTGATTATCTGCAAAGAGGTGGTGGAAAGTGAGGCAAAACTGCAGGGCAAATCCTT
AACTGCACATTGGGCTCATATGTCTATTCATAGTACCCTGCATCTGCTGGGTTATGATCATATTGAGCAAGCCGAAGCAG
TTGAAATGGAAAGTTTAGAGACAAAACTGTTAACCGAACTTGGTTTTACAGACCCTTACTTAAGTGAAAAAGAGTAA

Upstream 100 bases:

>100_bases
ATGATATAGTGCGCCATCCGGTTGTTGCCCGTATCGTTAAAGCCTATGAAGCCTTTGAGCATACAGCAGAAATAAAAGCC
GCTAAAGTGGAAAAAAAATA

Downstream 100 bases:

>100_bases
ATAAAATTAATGCCCGACGATAAAGCACAAACATCATCAGATAAAATAGGACTATTCGATAAAATTAGTAATCTTTTCCA
GGGCGAGCCACAAACTCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQLYVDLQIACSDPNDLPMPASFEKWIEAAILGGSESHREEAELTVRIVDQDEIMQLNHQYRNISKTTNVLAFPFQNPPG
LTLPLLGDLIICKEVVESEAKLQGKSLTAHWAHMSIHSTLHLLGYDHIEQAEAVEMESLETKLLTELGFTDPYLSEKE

Sequences:

>Translated_158_residues
MQLYVDLQIACSDPNDLPMPASFEKWIEAAILGGSESHREEAELTVRIVDQDEIMQLNHQYRNISKTTNVLAFPFQNPPG
LTLPLLGDLIICKEVVESEAKLQGKSLTAHWAHMSIHSTLHLLGYDHIEQAEAVEMESLETKLLTELGFTDPYLSEKE
>Mature_158_residues
MQLYVDLQIACSDPNDLPMPASFEKWIEAAILGGSESHREEAELTVRIVDQDEIMQLNHQYRNISKTTNVLAFPFQNPPG
LTLPLLGDLIICKEVVESEAKLQGKSLTAHWAHMSIHSTLHLLGYDHIEQAEAVEMESLETKLLTELGFTDPYLSEKE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=157, Percent_Identity=54.140127388535, Blast_Score=167, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PSYIN (A1SSC2)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_941986.1
- ProteinModelPortal:   A1SSC2
- SMR:   A1SSC2
- STRING:   A1SSC2
- GeneID:   4624845
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0533
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- PhylomeDB:   A1SSC2
- BioCyc:   PING357804:PING_0533-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17801; Mature: 17801

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLYVDLQIACSDPNDLPMPASFEKWIEAAILGGSESHREEAELTVRIVDQDEIMQLNHQ
CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHH
YRNISKTTNVLAFPFQNPPGLTLPLLGDLIICKEVVESEAKLQGKSLTAHWAHMSIHSTL
HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH
HLLGYDHIEQAEAVEMESLETKLLTELGFTDPYLSEKE
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQLYVDLQIACSDPNDLPMPASFEKWIEAAILGGSESHREEAELTVRIVDQDEIMQLNHQ
CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHH
YRNISKTTNVLAFPFQNPPGLTLPLLGDLIICKEVVESEAKLQGKSLTAHWAHMSIHSTL
HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH
HLLGYDHIEQAEAVEMESLETKLLTELGFTDPYLSEKE
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA